Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0076 Marchantia polymorpha HOM05D005333 ORTHO05D005776 9.5e-53 209.9 107 100.0
Pp3c15_5230 Physcomitrium patens HOM05D005333 ORTHO05D005776 1.0e-14 83.6 102 49.0
Nn2g12046 Nelumbo nucifera HOM05D005333 ORTHO05D005776 1.6e-12 76.3 66 56.1
Aqoxy7G03689 Aquilegia oxysepala HOM05D005333 ORTHO05D005776 2.1e-12 75.9 109 44.0
MSTRG.12252 Avicennia marina HOM05D005333 ORTHO05D005776 3.7e-12 75.1 56 58.9
MD02G1030500 Malus domestica HOM05D005333 ORTHO05D005776 6.2e-12 74.3 56 55.4
ECA246G0448 Erigeron canadensis HOM05D005333 ORTHO05D005776 1.1e-11 73.6 65 53.8
FAN23G1698 Fragaria x ananassa HOM05D005333 ORTHO05D005776 1.1e-11 73.6 108 39.8
MD15G1172100 Malus domestica HOM05D005333 ORTHO05D005776 1.1e-11 73.6 56 57.1
Nn2g12039 Nelumbo nucifera HOM05D005333 ORTHO05D005776 1.1e-11 73.6 51 66.7
AagrBONN_evm.TU.Sc2ySwM_344.103 Anthoceros agrestis HOM05D005333 ORTHO05D005776 1.4e-11 73.2 103 46.6
CDE04G2910 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 1.4e-11 73.2 48 62.5
vmacro20565 Vaccinium macrocarpon HOM05D005333 ORTHO05D005776 1.4e-11 73.2 56 58.9
DCAR_014887 Daucus carota HOM05D005333 ORTHO05D005776 1.8e-11 72.8 104 41.3
DCAR_020918 Daucus carota HOM05D005333 ORTHO05D005776 1.8e-11 72.8 106 41.5
Nitab4.5_0000028g0370 Nicotiana tabacum HOM05D005333 ORTHO05D005776 1.8e-11 72.8 76 50.0
SalBow6G5031 Salvia bowleyana HOM05D005333 ORTHO05D005776 1.8e-11 72.8 44 72.7
Duzib187G1708 Durio zibethinus HOM05D005333 ORTHO05D005776 2.4e-11 72.4 55 60.0
Nitab4.5_0006661g0010 Nicotiana tabacum HOM05D005333 ORTHO05D005776 2.4e-11 72.4 77 50.6
Oeu044201.1 Olea europaea HOM05D005333 ORTHO05D005776 2.4e-11 72.4 56 57.1
Sc08g0006540 Simmondsia chinensis HOM05D005333 ORTHO05D005776 2.4e-11 72.4 102 39.2
unitig_748.g8609 Utricularia gibba HOM05D005333 ORTHO05D005776 2.4e-11 72.4 85 45.9
AagrBONN_evm.TU.Sc2ySwM_344.112 Anthoceros agrestis HOM05D005333 ORTHO05D005776 3.1e-11 72.0 113 43.4
FvH4_1g03150 Fragaria vesca HOM05D005333 ORTHO05D005776 3.1e-11 72.0 104 40.4
FAN19G1630 Fragaria x ananassa HOM05D005333 ORTHO05D005776 3.1e-11 72.0 104 40.4
Prupe.7G244000 Prunus persica HOM05D005333 ORTHO05D005776 3.1e-11 72.0 103 41.7
MBI01_g45309_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 5.3e-11 71.2 44 68.2
CDE10G0227 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 6.9e-11 70.9 48 62.5
Migut.H01282 Erythranthe guttata HOM05D005333 ORTHO05D005776 6.9e-11 70.9 73 46.6
Gohir.A06G055500 Gossypium hirsutum HOM05D005333 ORTHO05D005776 6.9e-11 70.9 55 58.2
Gorai.010G063500 Gossypium raimondii HOM05D005333 ORTHO05D005776 6.9e-11 70.9 55 58.2
Potri.006G069000 Populus trichocarpa HOM05D005333 ORTHO05D005776 6.9e-11 70.9 75 46.7
SGA_v2.0_scaffold49G18402 Striga asiatica HOM05D005333 ORTHO05D005776 6.9e-11 70.9 44 68.2
TWI34G1084 Tripterygium wilfordii HOM05D005333 ORTHO05D005776 6.9e-11 70.9 75 48.0
CiPaw.03G244900 Carya illinoinensis HOM05D005333 ORTHO05D005776 9.0e-11 70.5 108 42.6
Hma1.2p1_0018F.1_g012330 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 9.0e-11 70.5 56 53.6
Lsat_1_v5_gn_5_31321 Lactuca sativa HOM05D005333 ORTHO05D005776 9.0e-11 70.5 53 64.2
Lalb_Chr12g0197971 Lupinus albus HOM05D005333 ORTHO05D005776 9.0e-11 70.5 53 62.3
Prupe.7G066500 Prunus persica HOM05D005333 ORTHO05D005776 9.0e-11 70.5 103 41.7
Gohir.D06G054400 Gossypium hirsutum HOM05D005333 ORTHO05D005776 1.2e-10 70.1 55 58.2
Lalb_Chr07g0179001 Lupinus albus HOM05D005333 ORTHO05D005776 1.2e-10 70.1 53 62.3
MBI01_g15682_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 1.2e-10 70.1 66 50.0
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 1.2e-10 70.1 51 56.9
SGA_v2.0_scaffold109G31056 Striga asiatica HOM05D005333 ORTHO05D005776 1.2e-10 70.1 61 52.5
GSVIVG01015545001 Vitis vinifera HOM05D005333 ORTHO05D005776 1.2e-10 70.1 76 47.4
Actinidia40477 Actinidia chinensis HOM05D001011 ORTHO05D000851 1.5e-10 69.7 76 46.1
arahy.Tifrunner.gnm1.ann1.83L7WY Arachis hypogaea HOM05D005333 ORTHO05D005776 1.5e-10 69.7 43 69.8
arahy.Tifrunner.gnm1.ann1.U3NP9C Arachis hypogaea HOM05D005333 ORTHO05D005776 1.5e-10 69.7 43 69.8
Psat4g038680 Pisum sativum HOM05D005333 ORTHO05D005776 1.5e-10 69.7 43 67.4
BraA03t10304Z Brassica rapa HOM05D005333 ORTHO05D005776 2.0e-10 69.3 43 65.1
Cpa.g.sc46.7 Carica papaya HOM05D005333 ORTHO05D005776 2.0e-10 69.3 102 39.2
Cfa003386 Carpinus fangiana HOM05D005333 ORTHO05D005776 2.0e-10 69.3 103 40.8
Dinv41504 Davidia involucrata HOM05D005333 ORTHO05D005776 2.0e-10 69.3 76 47.4
FAN26G1318 Fragaria x ananassa HOM05D005333 ORTHO05D005776 2.0e-10 69.3 103 38.8
RcHm_v2.0_Chr2g0088271 Rosa chinensis HOM05D005333 ORTHO05D005776 2.0e-10 69.3 104 38.5
Thecc.09G127500 Theobroma cacao HOM05D005333 ORTHO05D005776 2.0e-10 69.3 55 56.4
AT5G20180 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 2.6e-10 68.9 44 61.4
CANSAT11G0814 Cannabis sativa HOM05D005333 ORTHO05D005776 2.6e-10 68.9 102 41.2
Carub.0006s1858 Capsella rubella HOM05D005333 ORTHO05D005776 2.6e-10 68.9 44 61.4
Dinv36517 Davidia involucrata HOM05D005333 ORTHO05D005776 2.6e-10 68.9 53 54.7
Peaxi162Scf00046g00622 Petunia axillaris HOM05D005333 ORTHO05D005776 2.6e-10 68.9 76 46.1
AL6G31740 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 3.4e-10 68.6 44 59.1
BolC3t13621H Brassica oleracea HOM05D005333 ORTHO05D005776 3.4e-10 68.6 44 61.4
COL.COLO4_35113 Corchorus olitorius HOM05D005333 ORTHO05D005776 3.4e-10 68.6 57 56.1
Solyc07g008270.3 Solanum lycopersicum HOM05D005333 ORTHO05D005776 3.4e-10 68.6 75 45.3
Sopen07g004160 Solanum pennellii HOM05D005333 ORTHO05D005776 3.4e-10 68.6 75 45.3
PGSC0003DMG400019893 Solanum tuberosum HOM05D005333 ORTHO05D005776 3.4e-10 68.6 75 45.3
TPR.G26498 Trifolium pratense HOM05D005333 ORTHO05D005776 3.4e-10 68.6 43 62.8
Medtr4g114610 Medicago truncatula HOM05D005333 ORTHO05D005776 4.5e-10 68.2 107 38.3
Rhsim01G0068900 Rhododendron simsii HOM05D005333 ORTHO05D005776 4.5e-10 68.2 43 67.4
Zm00001eb212180 Zea mays HOM05D005333 ORTHO05D005776 4.5e-10 68.2 43 74.4
AUR62013349 Chenopodium quinoa HOM05D005333 ORTHO05D005776 5.8e-10 67.8 67 50.7
Cc06_g08400 Coffea canephora HOM05D005333 ORTHO05D005776 5.8e-10 67.8 56 53.6
Manes.14G133000 Manihot esculenta HOM05D005333 ORTHO05D005776 5.8e-10 67.8 102 36.3
Hund09250 Selenicereus undatus HOM05D005333 ORTHO05D005776 5.8e-10 67.8 65 50.8
Atru.chr1.953 Acer truncatum HOM05D005333 ORTHO05D005776 7.6e-10 67.4 55 50.9
A03p09910 Brassica napus HOM05D005333 ORTHO05D005776 7.6e-10 67.4 43 62.8
C03p11490 Brassica napus HOM05D005333 ORTHO05D005776 7.6e-10 67.4 43 62.8
CARHR192640 Cardamine hirsuta HOM05D005333 ORTHO05D005776 7.6e-10 67.4 43 65.1
Sed0012264 Sechium edule HOM05D005333 ORTHO05D005776 7.6e-10 67.4 43 65.1
Duzib168G0900 Durio zibethinus HOM05D005333 ORTHO05D005776 1.0e-09 67.0 64 51.6
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 1.0e-09 67.0 103 37.9
QL02p088661 Quercus lobata HOM05D005333 ORTHO05D005776 1.0e-09 67.0 56 50.0
Potri.018G131000 Populus trichocarpa HOM05D005333 ORTHO05D005776 1.3e-09 66.6 93 38.7
Zm00001eb103590 Zea mays HOM05D001170 ORTHO05D006602 1.3e-09 66.6 43 72.1
Aa31LG1G14430 Aethionema arabicum HOM05D005333 ORTHO05D005776 1.7e-09 66.2 40 65.0
Eucgr.C01530 Eucalyptus grandis HOM05D005333 ORTHO05D005776 1.7e-09 66.2 60 48.3
Hma1.2p1_0931F.1_g238060 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 1.7e-09 66.2 44 63.6
Os03g0811800 Oryza sativa ssp. japonica HOM05D005333 ORTHO05D005776 1.7e-09 66.2 43 72.1
Phvul.003G165300 Phaseolus vulgaris HOM05D005333 ORTHO05D005776 1.7e-09 66.2 103 35.9
THA.LOC104799642 Tarenaya hassleriana HOM05D005333 ORTHO05D005776 1.7e-09 66.2 78 44.9
EL10Ac8g18671 Beta vulgaris HOM05D005333 ORTHO05D005776 2.2e-09 65.9 67 49.3
AUR62011139 Chenopodium quinoa HOM05D005333 ORTHO05D005776 2.2e-09 65.9 67 50.7
HanXRQChr06g0182851 Helianthus annuus HOM05D005333 ORTHO05D005776 2.2e-09 65.9 93 41.9
CDE10G0631 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 2.9e-09 65.5 48 62.5
Rhsim03G0248400 Rhododendron simsii HOM05D005333 ORTHO05D005776 2.9e-09 65.5 79 44.3
PRCOL_00005826 Prasinoderma coloniale HOM05D005333 ORTHO05D005776 3.8e-09 65.1 43 62.8
PGR102G2059 Punica granatum HOM05D005333 ORTHO05D005776 3.8e-09 65.1 43 62.8
Ciclev10010320m.g Citrus clementina HOM05D005333 ORTHO05D005776 4.9e-09 64.7 96 37.5
Sp6g24220 Schrenkiella parvula HOM05D005333 ORTHO05D005776 6.5e-09 64.3 42 59.5
MELO3C010337.2 Cucumis melo HOM05D005333 ORTHO05D005776 8.4e-09 63.9 76 44.7
Lj4g0022056 Lotus japonicus HOM05D005333 ORTHO05D005776 8.4e-09 63.9 77 42.9
VMungo1215G0455 Vigna mungo HOM05D005333 ORTHO05D005776 8.4e-09 63.9 43 55.8
Ciclev10010005m.g Citrus clementina HOM05D005333 ORTHO05D005776 1.4e-08 63.2 43 58.1
CsaV3_1G030220 Cucumis sativus L. HOM05D005333 ORTHO05D005776 1.4e-08 63.2 66 45.5
ClCG06G011210 Citrullus lanatus HOM05D005333 ORTHO05D005776 2.5e-08 62.4 90 40.0
Thhalv10015097m.g Eutrema salsugineum HOM05D005333 ORTHO05D005776 2.5e-08 62.4 102 37.3
Glyma.13G166400 Glycine max HOM05D005333 ORTHO05D005776 2.5e-08 62.4 103 35.0
Lj4g0001981 Lotus japonicus HOM05D005333 ORTHO05D005776 2.5e-08 62.4 104 38.5
Glyma.17G114100 Glycine max HOM05D005333 ORTHO05D005776 4.2e-08 61.6 103 35.0
CBR_g19308 Chara braunii HOM05D005333 ORTHO05D005776 5.5e-08 61.2 39 66.7
SMO116G0310 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 7.1e-08 60.8 47 57.4
Zm00001eb091680 Zea mays HOM05D001170 ORTHO05D006602 7.1e-08 60.8 43 69.8
Zm00001eb091690 Zea mays HOM05D001170 ORTHO05D006602 7.1e-08 60.8 43 69.8
Haze_25566 Corylus avellana HOM05D005333 ORTHO05D005776 9.3e-08 60.5 96 38.5
Eucgr.C01196 Eucalyptus grandis HOM05D005333 ORTHO05D005776 9.3e-08 60.5 91 36.3
SGA_v2.0_scaffold3596G54365 Striga asiatica HOM05D005333 ORTHO05D005776 9.3e-08 60.5 34 73.5
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 1.6e-07 59.7 48 47.9
BraA02t05559Z Brassica rapa HOM05D005333 ORTHO05D005776 6.0e-07 57.8 48 47.9
BcaB05g22866 Brassica carinata HOM05D005333 ORTHO05D005776 1.0e-06 57.0 48 45.8
ATCG00760 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 1.3e-06 56.6 38 63.2
BcaC03g13741 Brassica carinata HOM05D005333 ORTHO05D005776 1.3e-06 56.6 48 45.8
BolC2t07023H Brassica oleracea HOM05D005333 ORTHO05D005776 1.3e-06 56.6 48 45.8
BolC7t41709H Brassica oleracea HOM05D005333 ORTHO05D005776 1.3e-06 56.6 38 63.2
BolSC29t60528H Brassica oleracea HOM05D005333 ORTHO05D005776 1.3e-06 56.6 38 63.2
BolSC29t60609H Brassica oleracea HOM05D005333 ORTHO05D005776 1.3e-06 56.6 38 63.2
BolSC35t60669H Brassica oleracea HOM05D005333 ORTHO05D005776 1.3e-06 56.6 38 63.2
BolSC35t60730H Brassica oleracea HOM05D005333 ORTHO05D005776 1.3e-06 56.6 38 63.2
BraA06t25383Z Brassica rapa HOM05D005333 ORTHO05D005776 1.3e-06 56.6 38 63.2
BraSC103t45446Z Brassica rapa HOM05D005333 ORTHO05D005776 1.3e-06 56.6 38 63.2
BraSC138t45554Z Brassica rapa HOM05D005333 ORTHO05D005776 1.3e-06 56.6 38 63.2
BraSC143t45636Z Brassica rapa HOM05D005333 ORTHO05D005776 1.3e-06 56.6 38 63.2
BraSC58t46440Z Brassica rapa HOM05D005333 ORTHO05D005776 1.3e-06 56.6 38 63.2
BraSC58t46501Z Brassica rapa HOM05D005333 ORTHO05D005776 1.3e-06 56.6 38 63.2
BraSC59t46571Z Brassica rapa HOM05D005333 ORTHO05D005776 1.3e-06 56.6 38 63.2
DCAR_032519 Daucus carota HOM05D005333 ORTHO05D005776 1.3e-06 56.6 38 63.2
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 1.3e-06 56.6 38 63.2
PSO548G0025 Papaver somniferum HOM05D005333 ORTHO05D005776 1.3e-06 56.6 38 63.2
PGR111G0044 Punica granatum HOM05D005333 ORTHO05D005776 1.3e-06 56.6 38 63.2
BNapus_Darmor_BZH_scaffold_38p01760 Brassica napus HOM05D005333 ORTHO05D005776 1.8e-06 56.2 48 43.8
SMO197G0073 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 1.8e-06 56.2 46 56.5
Gorai.009G350300 Gossypium raimondii HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 63.2
CARHR282240 Cardamine hirsuta HOM05D000964 ORTHO05D003870 6.7e-06 54.3 37 62.2


User provided reference genes

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