Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 2159.0 1080 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1325.8 1082 61.2
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1322.8 1078 60.2
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1302.3 1120 57.9
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1251.9 1082 58.2
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1168.7 1086 53.4
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1167.5 1092 53.4
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1162.1 1092 54.0
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1160.2 1095 53.1
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1159.8 1087 53.0
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1159.4 1093 52.4
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1159.1 1088 52.8
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1157.1 1090 53.8
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1157.1 1088 53.2
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1155.2 1082 52.9
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1154.0 1083 52.4
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1153.3 1086 52.9
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1151.7 1079 53.1
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1151.3 1090 52.7
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1150.6 1087 53.2
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1150.6 1100 52.5
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1150.2 1087 52.8
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1148.7 1095 52.5
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1147.1 1081 52.5
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1146.3 1079 52.3
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1145.6 1101 52.5
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1143.6 1085 52.0
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1142.9 1090 52.2
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1140.6 1090 52.6
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1140.2 1087 52.4
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1139.4 1079 52.8
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1139.4 1087 52.9
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1137.9 1077 52.4
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1137.5 1086 52.1
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1137.1 1093 52.8
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1136.7 1074 52.5
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1135.9 1080 52.2
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1135.9 1093 51.6
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1135.6 1086 52.9
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1134.8 1090 52.0
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1134.4 1072 52.2
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1134.4 1077 52.5
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1134.4 1079 52.1
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1133.6 1085 52.0
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1133.6 1086 51.8
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1133.6 1088 52.2
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1133.2 1086 52.8
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1132.9 1082 52.2
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1132.1 1074 52.4
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1131.7 1095 51.4
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1131.3 1087 53.1
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1131.3 1080 52.0
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1130.9 1074 52.7
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1130.5 1078 52.2
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1130.2 1090 52.1
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1129.8 1078 52.4
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1129.8 1089 52.2
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1129.8 1080 52.0
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1129.4 1091 52.4
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1129.0 1082 51.8
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1129.0 1085 52.4
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1128.6 1077 51.9
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1128.6 1089 52.2
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1127.9 1082 52.2
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1127.5 1078 52.2
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1127.1 1090 52.3
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1127.1 1087 53.0
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1127.1 1090 52.5
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1126.3 1087 52.8
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1124.8 1086 52.7
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1124.4 1088 52.4
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1124.0 1077 51.9
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1124.0 1090 51.7
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1124.0 1020 54.9
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1124.0 1082 51.8
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1123.6 1077 51.8
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1123.2 1077 51.9
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1123.2 1105 51.2
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1122.8 1077 51.8
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1120.9 1091 51.7
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1120.5 1088 52.1
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1120.1 1081 51.0
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1118.6 1090 51.0
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1116.7 1096 51.3
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1116.3 1060 52.5
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1115.9 1077 51.6
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1115.9 1077 51.6
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1112.4 1108 49.5
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1110.9 1088 51.6
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1110.9 1088 51.6
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1109.7 1088 51.6
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1109.4 1078 51.0
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1108.2 1085 51.4
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1107.4 1080 51.4
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1105.9 1086 51.0
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1103.2 1071 50.8
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1100.5 1109 50.0
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1098.6 1079 51.1
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1097.8 1084 50.3
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1095.5 1083 50.8
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1088.9 1103 49.1
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1088.9 1078 51.0
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1088.9 1093 51.5
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1084.3 1172 48.0
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1078.5 1172 48.0
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1077.8 1002 52.2
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 5.2e-311 1071.2 1078 50.1
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 1.4e-308 1063.1 1086 50.8
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 1.4e-308 1063.1 987 53.9
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 5.2e-308 1061.2 1102 49.4
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 8.9e-308 1060.4 1153 47.7
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 3.4e-299 1031.9 1103 48.6
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 2.3e-295 1019.2 1076 48.5
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 8.4e-290 1000.7 1003 50.9
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 7.9e-288 994.2 946 54.4
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 4.3e-286 988.4 1024 49.3
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 5.3e-268 928.3 1079 46.0
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 1.2e-259 900.6 796 56.0
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 4.6e-256 888.6 836 53.8
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 2.1e-240 836.6 695 59.1
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 8.5e-234 814.7 677 57.8
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 3.0e-231 806.2 735 54.0
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 3.5e-203 713.0 755 48.3
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 2.3e-199 700.3 816 46.9
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 8.9e-199 698.4 619 55.7
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 1.9e-180 637.5 495 60.0
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 5.6e-177 625.9 636 50.0
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.1e-151 542.0 635 46.6
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 9.4e-132 475.7 434 56.0
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 6.1e-131 473.0 981 32.0
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 8.0e-115 419.5 579 40.6
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 1.4e-114 418.7 303 62.4
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 4.4e-105 387.1 347 57.3
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 8.7e-69 266.5 374 40.4
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 6.2e-51 207.2 130 66.2
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 6.0e-46 190.7 286 37.4
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 3.4e-41 174.9 234 40.6
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 8.7e-37 160.2 205 44.4
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.9e-36 159.1 139 51.1
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 2.6e-25 122.1 241 34.4
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 2.6e-25 122.1 72 73.6
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 1.7e-24 119.4 154 41.6
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 3.3e-20 105.1 140 35.0
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 8.5e-16 90.5 97 49.5
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 2.5e-15 89.0 88 44.3
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 6.1e-14 84.3 100 39.0
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 9.7e-12 77.0 49 65.3


User provided reference genes

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