Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 8.1e-107 390.6 220 100.0
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 1.1e-68 263.8 208 77.9
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 1.5e-68 263.5 166 91.6
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 3.3e-68 262.3 226 72.1
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 3.3e-68 262.3 186 82.8
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 7.4e-68 261.2 222 73.9
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 9.7e-68 260.8 166 91.0
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 9.7e-68 260.8 166 91.0
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 9.7e-68 260.8 166 91.0
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 9.7e-68 260.8 217 74.2
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 9.7e-68 260.8 217 74.2
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 9.7e-68 260.8 217 74.2
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.3e-67 260.4 210 75.7
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 1.3e-67 260.4 212 75.0
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.6e-67 260.0 228 70.6
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 1.6e-67 260.0 226 71.7
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 2.2e-67 259.6 166 90.4
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 2.2e-67 259.6 166 90.4
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 2.2e-67 259.6 166 90.4
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 2.2e-67 259.6 166 90.4
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 2.2e-67 259.6 226 71.7
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 2.8e-67 259.2 166 90.4
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 2.8e-67 259.2 166 90.4
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 2.8e-67 259.2 166 90.4
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.8e-67 259.2 166 90.4
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 2.8e-67 259.2 182 84.1
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 3.7e-67 258.8 166 90.4
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 4.8e-67 258.5 166 89.8
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.8e-67 258.5 221 71.9
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 4.8e-67 258.5 166 89.8
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 4.8e-67 258.5 231 70.1
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 4.8e-67 258.5 231 70.1
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 4.8e-67 258.5 231 70.1
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 6.3e-67 258.1 166 89.8
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 6.3e-67 258.1 166 89.8
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 6.3e-67 258.1 166 89.8
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 6.3e-67 258.1 189 81.5
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 6.3e-67 258.1 212 74.5
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 6.3e-67 258.1 166 89.8
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 6.3e-67 258.1 231 70.1
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 6.3e-67 258.1 166 89.8
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 6.3e-67 258.1 204 76.5
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 6.3e-67 258.1 166 89.8
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 8.2e-67 257.7 215 74.9
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 8.2e-67 257.7 166 89.8
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 8.2e-67 257.7 166 89.8
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 1.1e-66 257.3 166 89.2
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.1e-66 257.3 197 79.2
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.1e-66 257.3 166 89.2
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.1e-66 257.3 166 89.2
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.1e-66 257.3 166 89.2
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 1.1e-66 257.3 166 89.2
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 1.1e-66 257.3 166 89.8
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.1e-66 257.3 226 70.4
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.1e-66 257.3 166 88.6
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.1e-66 257.3 166 88.6
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 88.6
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 89.2
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 89.2
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 89.2
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 89.2
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 89.2
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 89.2
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 89.2
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 89.2
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 89.2
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 89.2
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 89.2
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 89.2
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 88.0
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 88.0
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 89.2
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 1.4e-66 256.9 230 70.4
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 88.6
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.4e-66 256.9 166 89.2
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 1.8e-66 256.5 166 89.2
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 1.8e-66 256.5 166 89.2
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 1.8e-66 256.5 231 69.7
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 1.8e-66 256.5 226 70.4
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 2.4e-66 256.1 166 88.0
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 2.4e-66 256.1 166 88.6
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 2.4e-66 256.1 199 77.4
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 2.4e-66 256.1 201 77.1
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 2.4e-66 256.1 166 89.2
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 2.4e-66 256.1 166 88.6
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 2.4e-66 256.1 166 88.6
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 2.4e-66 256.1 166 89.2
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 3.1e-66 255.8 224 69.6
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.1e-66 255.8 166 89.2
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 3.1e-66 255.8 166 89.2
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 3.1e-66 255.8 166 88.0
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 3.1e-66 255.8 222 71.2
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 3.1e-66 255.8 166 89.2
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 3.1e-66 255.8 205 75.6
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 4.1e-66 255.4 228 70.2
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 4.1e-66 255.4 230 70.0
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 4.1e-66 255.4 203 75.9
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 4.1e-66 255.4 166 88.6
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 4.1e-66 255.4 211 74.9
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 4.1e-66 255.4 166 89.2
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 4.1e-66 255.4 166 88.6
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 5.3e-66 255.0 198 78.8
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 5.3e-66 255.0 165 87.9
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 5.3e-66 255.0 166 88.0
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 5.3e-66 255.0 166 88.6
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 5.3e-66 255.0 166 88.6
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 5.3e-66 255.0 230 69.6
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 5.3e-66 255.0 217 73.3
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 5.3e-66 255.0 166 88.6
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 5.3e-66 255.0 198 77.8
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 5.3e-66 255.0 198 77.8
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 5.3e-66 255.0 200 78.0
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 5.3e-66 255.0 166 88.6
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 5.3e-66 255.0 166 88.6
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 6.9e-66 254.6 166 88.6
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 6.9e-66 254.6 166 88.6
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 6.9e-66 254.6 166 88.6
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 6.9e-66 254.6 166 88.6
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 6.9e-66 254.6 202 77.2
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 6.9e-66 254.6 166 88.6
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 6.9e-66 254.6 166 88.6
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 9.0e-66 254.2 226 70.8
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 9.0e-66 254.2 202 77.2
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 9.0e-66 254.2 224 71.0
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.2e-65 253.8 222 73.0
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.2e-65 253.8 166 88.0
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 1.5e-65 253.4 166 87.3
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 2.0e-65 253.1 166 88.0
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 2.6e-65 252.7 166 88.0
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 3.4e-65 252.3 165 87.9
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 4.5e-65 251.9 220 70.9
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 5.9e-65 251.5 166 87.3
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 7.7e-65 251.1 166 88.0
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 5.0e-64 248.4 166 86.1
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 1.4e-63 246.9 198 76.8
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 2.7e-62 242.7 195 77.9
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 2.3e-61 239.6 166 86.7
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 6.3e-59 231.5 222 56.8
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 8.2e-59 231.1 167 82.0
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 5.3e-58 228.4 148 91.2
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 5.3e-58 228.4 169 82.2
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 1.0e-56 224.2 171 78.4
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 3.8e-56 222.2 148 85.8
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 1.4e-55 220.3 166 77.7
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 3.0e-53 212.6 140 92.9
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 5.2e-53 211.8 152 86.2
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.5e-52 210.3 166 75.3
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 2.0e-52 209.9 184 71.2
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.3e-51 207.2 158 69.6
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 2.4e-50 203.0 181 70.2
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 7.7e-49 198.0 132 91.7
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 3.8e-48 195.7 134 87.3
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 6.5e-48 194.9 200 66.0
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 8.5e-48 194.5 196 66.3
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 8.0e-46 188.0 166 62.0
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 1.4e-42 177.2 97 84.5
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 8.5e-40 167.9 173 56.1
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 6.5e-32 141.7 79 79.7
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.6e-30 137.1 131 58.8
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 2.8e-30 136.3 75 80.0
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 1.3e-27 127.5 127 53.5
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 1.7e-27 127.1 92 71.7
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 1.7e-27 127.1 107 61.7
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 9.2e-18 94.7 47 95.7
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 1.6e-17 94.0 109 48.6
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 2.3e-16 90.1 78 62.8
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.4e-13 80.9 166 34.3
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 9.5e-07 58.2 60 51.7
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 3.6e-06 56.2 109 43.1


User provided reference genes

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