Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0048 Marchantia polymorpha HOM05D003793 ORTHO05D004471 1.0e-81 306.6 149 100.0
Mapoly0025s0046 Marchantia polymorpha HOM05D003793 ORTHO05D004471 4.0e-81 304.7 149 99.3
Mapoly0013s0102 Marchantia polymorpha HOM05D003793 ORTHO05D004471 3.7e-79 298.1 149 96.6
Mapoly0921s0001 Marchantia polymorpha HOM05D003793 ORTHO05D004471 6.3e-79 297.4 149 96.6
Pp3c11_23800 Physcomitrium patens HOM05D003793 ORTHO05D004471 3.0e-65 251.9 146 78.1
AagrBONN_evm.TU.Sc2ySwM_362.1718 Anthoceros agrestis HOM05D003793 ORTHO05D004471 8.6e-60 233.8 149 70.5
SEGI_24486 Sequoiadendron giganteum HOM05D003793 ORTHO05D004471 8.6e-60 233.8 149 71.1
Hund26874 Selenicereus undatus HOM05D003793 ORTHO05D004471 1.9e-59 232.6 146 73.3
Oeu001351.2 Olea europaea HOM05D003793 ORTHO05D004471 4.3e-59 231.5 146 71.2
Sc13g0011010 Simmondsia chinensis HOM05D003793 ORTHO05D004471 3.6e-58 228.4 146 68.5
Os02g0701600 Oryza sativa ssp. japonica HOM05D003793 ORTHO05D004471 1.0e-57 226.9 146 69.2
Nn1g09155 Nelumbo nucifera HOM05D003793 ORTHO05D004471 2.3e-57 225.7 146 69.2
Migut.J00551 Erythranthe guttata HOM05D003793 ORTHO05D004471 4.0e-57 224.9 146 69.2
Zm00001eb251860 Zea mays HOM05D003793 ORTHO05D004471 4.0e-57 224.9 146 69.9
GSVIVG01024322001 Vitis vinifera HOM05D003793 ORTHO05D004471 5.2e-57 224.6 146 68.5
MSTRG.5738 Avicennia marina HOM05D003793 ORTHO05D004471 1.2e-56 223.4 146 67.8
ATR0829G208 Amborella trichopoda HOM05D003793 ORTHO05D004471 2.0e-56 222.6 146 70.5
Aqoxy6G01754 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 2.6e-56 222.2 146 68.5
Dinv29122 Davidia involucrata HOM05D003793 ORTHO05D004471 2.6e-56 222.2 146 68.5
Lsat_1_v5_gn_2_104420 Lactuca sativa HOM05D003793 ORTHO05D004471 2.6e-56 222.2 146 69.2
SMO145G0054 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 3.4e-56 221.9 147 70.7
TAR375G0772 Trochodendron aralioides HOM05D003793 ORTHO05D004471 3.4e-56 221.9 146 68.5
Aqoxy6G01753 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 9.8e-56 220.3 146 67.8
EL10Ac3g05040 Beta vulgaris HOM05D003793 ORTHO05D004471 9.8e-56 220.3 146 68.5
Ah.04g156140 Amaranthus hybridus HOM05D003793 ORTHO05D004471 1.3e-55 219.9 146 67.1
Cc11_g00040 Coffea canephora HOM05D003793 ORTHO05D004471 1.7e-55 219.5 146 67.1
Hma1.2p1_0419F.1_g149530 Hydrangea macrophylla HOM05D003793 ORTHO05D004471 1.7e-55 219.5 146 67.8
Lalb_Chr05g0211181 Lupinus albus HOM05D003793 ORTHO05D004471 1.7e-55 219.5 146 71.2
Rhsim09G0190300 Rhododendron simsii HOM05D003793 ORTHO05D004471 1.7e-55 219.5 146 69.2
AUR62028213 Chenopodium quinoa HOM05D003793 ORTHO05D004471 2.2e-55 219.2 146 67.8
Actinidia33800 Actinidia chinensis HOM05D003793 ORTHO05D004471 4.9e-55 218.0 146 67.8
CAN.G726.8 Capsicum annuum HOM05D003793 ORTHO05D004471 4.9e-55 218.0 146 67.1
Cpa.g.sc43.146 Carica papaya HOM05D003793 ORTHO05D004471 4.9e-55 218.0 146 69.2
PSO210G3154 Papaver somniferum HOM05D003793 ORTHO05D004471 4.9e-55 218.0 146 66.4
TWI60G0578 Tripterygium wilfordii HOM05D003793 ORTHO05D004471 6.4e-55 217.6 146 68.5
Nitab4.5_0000411g0010 Nicotiana tabacum HOM05D003793 ORTHO05D004471 8.3e-55 217.2 146 67.1
PSO210G3487 Papaver somniferum HOM05D003793 ORTHO05D004471 8.3e-55 217.2 146 66.4
SalBow3G1300 Salvia bowleyana HOM05D003793 ORTHO05D004471 1.1e-54 216.9 146 68.5
Phvul.011G017200 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 1.4e-54 216.5 146 69.2
unitig_578.g15801 Utricularia gibba HOM05D003793 ORTHO05D004471 1.4e-54 216.5 149 67.1
THA.LOC104821707 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 1.8e-54 216.1 146 67.8
HanXRQChr11g0342111 Helianthus annuus HOM05D003793 ORTHO05D004471 2.4e-54 215.7 146 66.4
VMungo1127G0200 Vigna mungo HOM05D003793 ORTHO05D004471 2.4e-54 215.7 146 68.5
QL09p020586 Quercus lobata HOM05D003793 ORTHO05D004471 3.2e-54 215.3 146 65.8
Solyc08g076360.4 Solanum lycopersicum HOM05D003793 ORTHO05D004471 4.1e-54 214.9 146 66.4
CiPaw.05G212400 Carya illinoinensis HOM05D003793 ORTHO05D004471 5.4e-54 214.5 146 67.8
Atru.chr12.1860 Acer truncatum HOM05D003793 ORTHO05D004471 7.0e-54 214.2 146 67.1
vmacro22191 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 7.0e-54 214.2 146 66.4
Ciclev10005360m.g Citrus clementina HOM05D003793 ORTHO05D004471 1.2e-53 213.4 146 67.8
Ciclev10032026m.g Citrus clementina HOM05D003793 ORTHO05D004471 1.2e-53 213.4 146 67.8
Manes.08G160400 Manihot esculenta HOM05D003793 ORTHO05D004471 1.2e-53 213.4 146 68.5
Phvul.011G017100 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 1.2e-53 213.4 149 66.4
VMungo1127G2010 Vigna mungo HOM05D003793 ORTHO05D004471 1.2e-53 213.4 149 66.4
Ca_13083_v3 Cicer arietinum L. HOM05D003793 ORTHO05D004471 1.6e-53 213.0 146 67.1
Glyma.09G222800 Glycine max HOM05D003793 ORTHO05D004471 3.5e-53 211.8 146 67.8
Lj3g0009427 Lotus japonicus HOM05D003793 ORTHO05D004471 3.5e-53 211.8 146 67.1
Potri.013G077000 Populus trichocarpa HOM05D003793 ORTHO05D004471 4.6e-53 211.5 146 67.1
Sabra13G0066000 Salix brachista HOM05D003793 ORTHO05D004471 4.6e-53 211.5 146 67.1
Lj3A883G46 Lonicera japonica HOM05D003793 ORTHO05D004471 6.0e-53 211.1 146 64.4
THA.LOC104805718 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 6.0e-53 211.1 146 67.1
arahy.Tifrunner.gnm1.ann1.5NG4EY Arachis hypogaea HOM05D003793 ORTHO05D004471 7.8e-53 210.7 146 68.5
arahy.Tifrunner.gnm1.ann1.L925XS Arachis hypogaea HOM05D003793 ORTHO05D004471 7.8e-53 210.7 146 68.5
Glyma.12G014300 Glycine max HOM05D003793 ORTHO05D004471 7.8e-53 210.7 146 67.8
Duzib177G0459 Durio zibethinus HOM05D003793 ORTHO05D004471 1.0e-52 210.3 146 65.1
Gohir.A02G114300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 1.0e-52 210.3 146 65.8
Gorai.003G058100 Gossypium raimondii HOM05D003793 ORTHO05D004471 1.0e-52 210.3 146 65.8
arahy.Tifrunner.gnm1.ann1.SYC9J3 Arachis hypogaea HOM05D003793 ORTHO05D004471 1.7e-52 209.5 146 67.8
arahy.Tifrunner.gnm1.ann1.TXPN3Z Arachis hypogaea HOM05D003793 ORTHO05D004471 1.7e-52 209.5 146 67.8
FvH4_6g17810 Fragaria vesca HOM05D003793 ORTHO05D004471 1.7e-52 209.5 146 63.7
FAN14G1236 Fragaria x ananassa HOM05D003793 ORTHO05D004471 1.7e-52 209.5 146 63.7
Aa31LG2G2160 Aethionema arabicum HOM05D003793 ORTHO05D004471 3.0e-52 208.8 146 64.4
FAN02G3282 Fragaria x ananassa HOM05D003793 ORTHO05D004471 3.0e-52 208.8 146 63.0
FAN05G0338 Fragaria x ananassa HOM05D003793 ORTHO05D004471 3.0e-52 208.8 146 63.0
Gohir.D03G055300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 3.0e-52 208.8 146 65.1
Atru.chr12.1866 Acer truncatum HOM05D003793 ORTHO05D004471 3.9e-52 208.4 146 65.8
RcHm_v2.0_Chr3g0472061 Rosa chinensis HOM05D003793 ORTHO05D004471 3.9e-52 208.4 146 63.7
CsaV3_2G036010 Cucumis sativus L. HOM05D003793 ORTHO05D004471 6.6e-52 207.6 146 64.4
Glyma.12G014200 Glycine max HOM05D003793 ORTHO05D004471 6.6e-52 207.6 146 66.4
Thecc.05G223100 Theobroma cacao HOM05D003793 ORTHO05D004471 6.6e-52 207.6 146 63.0
Haze_00367 Corylus avellana HOM05D003793 ORTHO05D004471 8.6e-52 207.2 146 65.1
Duzib106G1724 Durio zibethinus HOM05D003793 ORTHO05D004471 8.6e-52 207.2 146 63.7
Gohir.D13G162300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 1.1e-51 206.8 146 63.7
Gorai.013G184400 Gossypium raimondii HOM05D003793 ORTHO05D004471 1.1e-51 206.8 146 63.7
ClCG02G007700 Citrullus lanatus HOM05D003793 ORTHO05D004471 1.5e-51 206.5 146 65.1
Cfa016078 Carpinus fangiana HOM05D003793 ORTHO05D004471 1.9e-51 206.1 146 65.1
Psat6g024400 Pisum sativum HOM05D003793 ORTHO05D004471 2.5e-51 205.7 146 63.7
MELO3C024736.2 Cucumis melo HOM05D003793 ORTHO05D004471 3.3e-51 205.3 146 64.4
Eucgr.K00068 Eucalyptus grandis HOM05D003793 ORTHO05D004471 4.3e-51 204.9 146 66.4
PGR142G3821 Punica granatum HOM05D003793 ORTHO05D004471 4.3e-51 204.9 146 63.7
HanXRQChr08g0217461 Helianthus annuus HOM05D003793 ORTHO05D004471 5.6e-51 204.5 146 61.0
HanXRQChr08g0217471 Helianthus annuus HOM05D003793 ORTHO05D004471 5.6e-51 204.5 146 61.0
HanXRQChr08g0217581 Helianthus annuus HOM05D003793 ORTHO05D004471 5.6e-51 204.5 146 61.0
Medtr1g014690 Medicago truncatula HOM05D003793 ORTHO05D004471 5.6e-51 204.5 146 63.7
A02p12940 Brassica napus HOM05D003793 ORTHO05D004471 7.3e-51 204.1 146 63.0
BraA02t06348Z Brassica rapa HOM05D003793 ORTHO05D004471 7.3e-51 204.1 146 63.0
CANSAT21G0915 Cannabis sativa HOM05D003793 ORTHO05D004471 7.3e-51 204.1 146 65.1
CDE11G0124 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 7.3e-51 204.1 146 64.4
ECA233G1952 Erigeron canadensis HOM05D003793 ORTHO05D004471 7.3e-51 204.1 146 62.3
Prupe.7G118300 Prunus persica HOM05D003793 ORTHO05D004471 7.3e-51 204.1 146 63.0
TPR.G38857 Trifolium pratense HOM05D003793 ORTHO05D004471 7.3e-51 204.1 146 63.7
CDE02G3720 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.2e-50 203.4 146 63.0
Nitab4.5_0004045g0040 Nicotiana tabacum HOM05D003793 ORTHO05D004471 1.6e-50 203.0 175 57.1
Carub.0002s1011 Capsella rubella HOM05D003793 ORTHO05D004471 2.8e-50 202.2 146 63.0
CDE12G0793 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 2.8e-50 202.2 146 63.0
Sp5g19260 Schrenkiella parvula HOM05D003793 ORTHO05D004471 3.6e-50 201.8 146 62.3
BcaC03g16025 Brassica carinata HOM05D003793 ORTHO05D004471 4.7e-50 201.4 146 62.3
C02p37750 Brassica napus HOM05D003793 ORTHO05D004471 4.7e-50 201.4 146 62.3
BolC2t09793H Brassica oleracea HOM05D003793 ORTHO05D004471 4.7e-50 201.4 146 62.3
BcaB05g24071 Brassica carinata HOM05D003793 ORTHO05D004471 6.2e-50 201.1 146 62.3
BcaC03g14668 Brassica carinata HOM05D003793 ORTHO05D004471 6.2e-50 201.1 146 62.3
C02p21050 Brassica napus HOM05D003793 ORTHO05D004471 6.2e-50 201.1 146 62.3
BolC2t08246H Brassica oleracea HOM05D003793 ORTHO05D004471 6.2e-50 201.1 146 62.3
Sed0025175 Sechium edule HOM05D003793 ORTHO05D004471 6.2e-50 201.1 146 63.0
BraA02t07388Z Brassica rapa HOM05D003793 ORTHO05D004471 1.1e-49 200.3 146 61.6
CDE01G0103 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.1e-49 200.3 146 61.6
FAN09G3950 Fragaria x ananassa HOM05D003793 ORTHO05D004471 1.1e-49 200.3 143 60.8
A02p23940 Brassica napus HOM05D003793 ORTHO05D004471 1.4e-49 199.9 146 61.6
HPP92_022760 Vanilla planifolia HOM05D003793 ORTHO05D004471 2.3e-49 199.1 146 61.6
AT1G64970 Arabidopsis thaliana HOM05D003793 ORTHO05D004471 3.1e-49 198.7 146 61.6
Cre09.g393400 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 3.1e-49 198.7 146 62.3
Thhalv10018768m.g Eutrema salsugineum HOM05D003793 ORTHO05D004471 3.1e-49 198.7 146 61.0
HPP92_027670 Vanilla planifolia HOM05D003793 ORTHO05D004471 4.0e-49 198.4 146 61.6
Duzib177G0347 Durio zibethinus HOM05D003793 ORTHO05D004471 8.9e-49 197.2 146 62.3
Aa31LG2G2170 Aethionema arabicum HOM05D003793 ORTHO05D004471 1.2e-48 196.8 146 60.3
MD12G1017400 Malus domestica HOM05D003793 ORTHO05D004471 1.2e-48 196.8 146 61.0
AL2G19520 Arabidopsis lyrata HOM05D003793 ORTHO05D004471 1.5e-48 196.4 146 60.3
CARHR056370 Cardamine hirsuta HOM05D003793 ORTHO05D004471 1.5e-48 196.4 146 60.3
Actinidia34215 Actinidia chinensis HOM05D003793 ORTHO05D004471 3.4e-48 195.3 139 64.7
MD14G1015100 Malus domestica HOM05D003793 ORTHO05D004471 4.4e-48 194.9 146 60.3
Nitab4.5_0001475g0030 Nicotiana tabacum HOM05D003793 ORTHO05D004471 4.4e-48 194.9 172 55.2
MCO16G568 Micromonas commoda HOM05D003793 ORTHO05D004471 4.1e-46 188.3 146 60.3
CBR_g28039 Chara braunii HOM05D003793 ORTHO05D004471 5.4e-46 188.0 131 63.4
ATR0829G050 Amborella trichopoda HOM05D003793 ORTHO05D004471 7.0e-46 187.6 146 53.4
Lsat_1_v5_gn_8_24121 Lactuca sativa HOM05D003793 ORTHO05D004471 7.0e-46 187.6 134 61.2
Hund00468 Selenicereus undatus HOM05D003793 ORTHO05D004471 4.3e-43 178.3 146 57.5
vmacro09916 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 1.2e-42 176.8 115 68.7
Nn3g21149 Nelumbo nucifera HOM05D003793 ORTHO05D004471 4.7e-42 174.9 146 54.8
FAN05G4652 Fragaria x ananassa HOM05D003793 ORTHO05D004471 1.1e-41 173.7 115 65.2
QL09p020551 Quercus lobata HOM05D003793 ORTHO05D004471 1.1e-41 173.7 115 66.1
COL.COLO4_15127 Corchorus olitorius HOM05D003793 ORTHO05D004471 4.0e-41 171.8 115 66.1
SalBow3G2252 Salvia bowleyana HOM05D003793 ORTHO05D004471 4.0e-41 171.8 115 67.8
SGA_v2.0_scaffold126G33927 Striga asiatica HOM05D003793 ORTHO05D004471 1.2e-40 170.2 114 66.7
Gohir.A13G157500 Gossypium hirsutum HOM05D003793 ORTHO05D004471 2.0e-40 169.5 115 64.3
CDE11G0369 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 8.3e-39 164.1 115 64.3
PGR142G3948 Punica granatum HOM05D003793 ORTHO05D004471 5.6e-35 151.4 147 49.7
PGR142G4176 Punica granatum HOM05D003793 ORTHO05D004471 2.8e-34 149.1 147 49.7
AUR62002095 Chenopodium quinoa HOM05D003793 ORTHO05D004471 1.1e-33 147.1 97 66.0
SMO119G0172 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 2.0e-32 142.9 150 42.0
SMO351G0374 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 2.0e-32 142.9 150 41.3
SMO115G0333 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 2.6e-32 142.5 150 41.3
Oeu027984.2 Olea europaea HOM05D003793 ORTHO05D004471 9.2e-30 134.0 80 73.8
Rhsim09G0214000 Rhododendron simsii HOM05D003793 ORTHO05D004471 1.7e-28 129.8 85 68.2
SMO119G0398 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 3.0e-28 129.0 150 37.3
PGR142G2095 Punica granatum HOM05D003793 ORTHO05D004471 4.0e-25 118.6 126 47.6
HPP92_027662 Vanilla planifolia HOM05D003793 ORTHO05D004471 4.0e-25 118.6 80 66.2
Cc06_g18710 Coffea canephora HOM05D003793 ORTHO05D004471 5.8e-24 114.8 148 39.9
ECA238G4812 Erigeron canadensis HOM05D003793 ORTHO05D004471 7.6e-24 114.4 115 50.4
LjContig00408g0002790 Lotus japonicus HOM05D003793 ORTHO05D004471 3.2e-22 109.0 112 49.1
Cc06_g18700 Coffea canephora HOM05D003793 ORTHO05D004471 2.1e-21 106.3 148 36.5
arahy.Tifrunner.gnm1.ann1.DIJP1R Arachis hypogaea HOM05D003793 ORTHO05D004471 3.0e-20 102.4 69 66.7
Cc06_g18750 Coffea canephora HOM05D003793 ORTHO05D004471 6.6e-20 101.3 146 35.6
Peaxi162Scf00052g00016 Petunia axillaris HOM05D003793 ORTHO05D004471 1.9e-19 99.8 86 53.5
Hund00469 Selenicereus undatus HOM05D003793 ORTHO05D004471 1.3e-15 87.0 61 67.2
MCO15G681 Micromonas commoda HOM05D003793 ORTHO05D004471 1.4e-14 83.6 143 30.8
Cre14.g624350 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 2.1e-13 79.7 148 29.1
arahy.Tifrunner.gnm1.ann1.V58P3M Arachis hypogaea HOM05D003793 ORTHO05D004471 3.5e-13 79.0 46 78.3
PRCOL_00002005 Prasinoderma coloniale HOM05D003793 ORTHO05D004471 1.0e-12 77.4 156 30.8
MCO13G309 Micromonas commoda HOM05D003793 ORTHO05D004471 7.4e-11 71.2 95 37.9


User provided reference genes

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