Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 1.1e-89 333.2 162 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 5.0e-29 131.7 71 81.7
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 1.9e-28 129.8 71 81.7
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 8.0e-27 124.4 71 83.1
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 1.0e-26 124.0 71 81.7
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 1.4e-26 123.6 71 81.7
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 1.4e-26 123.6 71 81.7
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 1.4e-26 123.6 71 83.1
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 1.8e-26 123.2 71 80.3
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 1.8e-26 123.2 71 80.3
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 1.8e-26 123.2 71 80.3
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 2.3e-26 122.9 74 79.7
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 2.3e-26 122.9 71 81.7
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 2.3e-26 122.9 71 81.7
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 2.3e-26 122.9 71 81.7
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 4.0e-26 122.1 71 80.3
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 4.0e-26 122.1 71 80.3
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 4.0e-26 122.1 71 80.3
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 4.0e-26 122.1 71 81.7
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 4.0e-26 122.1 72 80.6
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 4.0e-26 122.1 71 81.7
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 4.0e-26 122.1 71 80.3
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 4.0e-26 122.1 71 80.3
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 5.2e-26 121.7 71 81.7
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 5.2e-26 121.7 71 81.7
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 5.2e-26 121.7 71 80.3
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 5.2e-26 121.7 71 80.3
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 6.7e-26 121.3 70 81.4
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 6.7e-26 121.3 71 81.7
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 8.8e-26 120.9 71 78.9
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 8.8e-26 120.9 71 80.3
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 8.8e-26 120.9 71 80.3
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 8.8e-26 120.9 71 80.3
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 8.8e-26 120.9 71 80.3
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 8.8e-26 120.9 71 78.9
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 1.1e-25 120.6 71 80.3
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 1.1e-25 120.6 70 81.4
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 1.1e-25 120.6 71 80.3
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 1.1e-25 120.6 71 78.9
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 1.1e-25 120.6 71 78.9
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 1.1e-25 120.6 71 78.9
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 1.1e-25 120.6 71 80.3
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 1.1e-25 120.6 71 78.9
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 1.5e-25 120.2 72 76.4
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 1.5e-25 120.2 72 76.4
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 1.5e-25 120.2 72 76.4
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 1.5e-25 120.2 72 76.4
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 1.5e-25 120.2 70 80.0
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 1.5e-25 120.2 71 78.9
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 2.0e-25 119.8 71 78.9
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 2.6e-25 119.4 70 78.6
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 2.6e-25 119.4 70 78.6
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 2.6e-25 119.4 71 81.7
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 3.3e-25 119.0 71 78.9
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 3.3e-25 119.0 71 78.9
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 3.3e-25 119.0 69 79.7
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 4.4e-25 118.6 76 72.4
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 4.4e-25 118.6 71 78.9
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 4.4e-25 118.6 71 77.5
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 4.4e-25 118.6 71 78.9
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 4.4e-25 118.6 71 78.9
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 4.4e-25 118.6 71 78.9
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 4.4e-25 118.6 71 80.3
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 4.4e-25 118.6 71 77.5
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 4.4e-25 118.6 71 77.5
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 4.4e-25 118.6 71 78.9
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 5.7e-25 118.2 71 78.9
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 5.7e-25 118.2 71 74.6
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 5.7e-25 118.2 72 76.4
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 7.5e-25 117.9 71 77.5
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 7.5e-25 117.9 71 77.5
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 9.7e-25 117.5 71 77.5
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 9.7e-25 117.5 71 78.9
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 9.7e-25 117.5 71 76.1
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 1.7e-24 116.7 71 77.5
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 2.2e-24 116.3 71 76.1
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 2.2e-24 116.3 71 76.1
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 2.2e-24 116.3 71 76.1
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 2.2e-24 116.3 71 76.1
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 2.8e-24 115.9 71 77.5
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 2.8e-24 115.9 71 77.5
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 2.8e-24 115.9 71 77.5
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 3.7e-24 115.5 71 77.5
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 6.3e-24 114.8 71 77.5
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 6.3e-24 114.8 71 76.1
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 6.3e-24 114.8 71 78.9
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 6.3e-24 114.8 71 74.6
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 8.2e-24 114.4 77 71.4
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 1.1e-23 114.0 70 75.7
FvH4_4g23990 Fragaria vesca HOM05D005946 ORTHO05D007340 1.4e-23 113.6 69 79.7
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 1.4e-23 113.6 71 77.5
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 3.1e-23 112.5 63 84.1
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 3.1e-23 112.5 71 71.8
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 4.1e-23 112.1 69 78.3
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 1.2e-22 110.5 90 63.3
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 2.0e-22 109.8 71 74.6
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 1.1e-20 104.0 62 77.4
Cre07.g325735 Chlamydomonas reinhardtii HOM05D005946 ORTHO05D007340 1.5e-20 103.6 71 66.2
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 4.2e-20 102.1 71 70.4
Sabra08G0134600 Salix brachista HOM05D005946 ORTHO05D007340 7.2e-20 101.3 150 46.7
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 2.1e-19 99.8 133 44.4
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 2.0e-17 93.2 56 76.8
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 2.0e-17 93.2 58 74.1
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 2.2e-16 89.7 50 84.0
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 3.7e-16 89.0 55 70.9
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 3.1e-15 85.9 50 74.0
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 4.1e-15 85.5 62 67.7
MCO08G327 Micromonas commoda HOM05D005946 ORTHO05D007340 4.1e-15 85.5 63 63.5
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 9.1e-15 84.3 49 77.6
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 1.6e-14 83.6 49 79.6
FAN17G0158 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.5e-14 82.4 49 79.6
FAN12G4044 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.0e-13 80.9 50 76.0
RcHm_v2.0_Chr5g0020411 Rosa chinensis HOM05D005946 ORTHO05D007340 1.0e-13 80.9 73 53.4
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 2.9e-13 79.3 47 74.5
PRCOL_00003875 Prasinoderma coloniale HOM05D005946 ORTHO05D007340 3.8e-13 79.0 71 54.9
FvH4_3g12470 Fragaria vesca HOM05D005946 ORTHO05D045642 8.5e-13 77.8 71 53.5
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 1.5e-12 77.0 55 65.5
Nn1g00299 Nelumbo nucifera HOM05D005946 ORTHO05D007340 1.9e-12 76.6 44 75.0
Dinv16088 Davidia involucrata HOM05D005946 ORTHO05D007340 6.8e-10 68.2 48 64.6
HPP92_000512 Vanilla planifolia HOM05D005946 ORTHO05D007340 2.6e-09 66.2 38 73.7
SHI17703 Sapria himalayana HOM05D005946 ORTHO05D007340 3.4e-09 65.9 38 76.3
Nitab4.5_0005774g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 1.7e-08 63.5 34 85.3
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 2.8e-08 62.8 37 78.4
arahy.Tifrunner.gnm1.ann1.K0QS2G Arachis hypogaea HOM05D005946 ORTHO05D007340 3.7e-08 62.4 56 57.1
ClCG08G010140 Citrullus lanatus HOM05D005946 ORTHO05D007340 6.3e-08 61.6 37 70.3
Peaxi162Scf00207g00238 Petunia axillaris HOM05D005946 ORTHO05D007340 6.3e-08 61.6 37 75.7
Sabra10G0047000 Salix brachista HOM05D005946 ORTHO05D007340 6.3e-08 61.6 43 65.1
Sed0005468 Sechium edule HOM05D005946 ORTHO05D007340 6.3e-08 61.6 34 82.4
FAN04G2943 Fragaria x ananassa HOM05D005946 ORTHO05D007340 8.3e-08 61.2 38 73.7
FAN08G3074 Fragaria x ananassa HOM05D005946 ORTHO05D007340 8.3e-08 61.2 38 73.7
FAN18G3129 Fragaria x ananassa HOM05D005946 ORTHO05D007340 8.3e-08 61.2 38 73.7
Psat5g094720 Pisum sativum HOM05D005946 ORTHO05D007340 1.4e-07 60.5 47 59.6


User provided reference genes

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