Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 0.0e+00 2816.6 1748 100.0
Mapoly0034s0131 Marchantia polymorpha HOM05D005839 ORTHO05D005686 9.8e-22 110.9 219 35.2
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 1.5e-14 87.0 217 30.9
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 2.1e-11 76.6 62 56.5
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 6.0e-11 75.1 35 80.0
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 6.0e-11 75.1 110 40.9
AagrBONN_evm.TU.Sc2ySwM_344.2400 Anthoceros agrestis HOM05D010750 ORTHO05D005686 2.3e-10 73.2 44 65.9
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 9.5e-09 67.8 57 49.1
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 2.1e-08 66.6 43 60.5
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 3.6e-08 65.9 43 58.1
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 6.2e-08 65.1 44 56.8
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 6.2e-08 65.1 44 56.8
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 6.2e-08 65.1 44 56.8
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 8.1e-08 64.7 42 54.8
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 1.1e-07 64.3 53 50.9
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.4e-07 63.9 46 56.5
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 1.4e-07 63.9 46 56.5
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 1.4e-07 63.9 40 60.0
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.4e-07 63.9 46 52.2
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 1.8e-07 63.5 44 54.5
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.8e-07 63.5 63 44.4
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.8e-07 63.5 63 44.4
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 1.8e-07 63.5 34 64.7
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 1.8e-07 63.5 49 55.1
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 2.4e-07 63.2 51 54.9
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 3.1e-07 62.8 62 45.2
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 3.1e-07 62.8 40 57.5
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 3.1e-07 62.8 47 51.1
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 3.1e-07 62.8 36 63.9
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 4.0e-07 62.4 33 69.7
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.0e-07 62.4 63 42.9
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 5.2e-07 62.0 31 71.0
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 5.2e-07 62.0 31 71.0
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 5.2e-07 62.0 31 71.0
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 5.2e-07 62.0 31 71.0
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 5.2e-07 62.0 31 71.0
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 5.2e-07 62.0 31 71.0
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 6.8e-07 61.6 31 67.7
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 6.8e-07 61.6 34 61.8
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 8.9e-07 61.2 44 52.3
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 8.9e-07 61.2 44 52.3
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 1.2e-06 60.8 31 67.7
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.2e-06 60.8 31 67.7
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 1.2e-06 60.8 44 52.3
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 1.2e-06 60.8 44 52.3
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 1.2e-06 60.8 39 56.4
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.5e-06 60.5 31 67.7
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-06 60.5 43 48.8
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 1.5e-06 60.5 31 64.5
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 1.5e-06 60.5 31 67.7
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 2.0e-06 60.1 31 71.0
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 2.0e-06 60.1 31 71.0
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 2.0e-06 60.1 31 64.5
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 2.0e-06 60.1 46 47.8
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 2.6e-06 59.7 32 71.9
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 2.6e-06 59.7 31 71.0
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 2.6e-06 59.7 31 71.0
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 2.6e-06 59.7 31 71.0
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 2.6e-06 59.7 31 64.5
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 3.4e-06 59.3 31 67.7
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 3.4e-06 59.3 31 67.7
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 3.4e-06 59.3 43 53.5
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 4.4e-06 58.9 31 67.7
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 4.4e-06 58.9 31 71.0
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 4.4e-06 58.9 31 71.0
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 4.4e-06 58.9 31 71.0
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 4.4e-06 58.9 31 71.0
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 4.4e-06 58.9 31 71.0
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 4.4e-06 58.9 31 71.0
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 4.4e-06 58.9 31 74.2
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 4.4e-06 58.9 31 67.7
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 4.4e-06 58.9 31 67.7
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 4.4e-06 58.9 35 68.6
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 4.4e-06 58.9 44 47.7
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 4.4e-06 58.9 68 42.6
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 5.8e-06 58.5 31 71.0
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 5.8e-06 58.5 31 67.7
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 5.8e-06 58.5 31 71.0
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 5.8e-06 58.5 37 56.8
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 5.8e-06 58.5 33 60.6
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 5.8e-06 58.5 31 71.0
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 5.8e-06 58.5 31 67.7
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 5.8e-06 58.5 31 67.7
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 5.8e-06 58.5 31 67.7
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 5.8e-06 58.5 31 67.7
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 7.6e-06 58.2 44 52.3
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 7.6e-06 58.2 31 67.7
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 7.6e-06 58.2 46 50.0
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 9.9e-06 57.8 34 64.7
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 9.9e-06 57.8 51 49.0
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 9.9e-06 57.8 46 47.8
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 9.9e-06 57.8 31 61.3


User provided reference genes

Program Settings