Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 4.2e-309 1063.9 563 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 3.6e-143 512.7 445 60.7
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 1.7e-140 503.8 437 62.0
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 2.2e-140 503.4 453 60.0
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.4e-139 500.7 454 60.6
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 5.4e-139 498.8 472 58.1
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 3.5e-138 496.1 470 57.9
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 3.5e-138 496.1 467 56.3
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 4.6e-138 495.7 439 59.9
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 6.0e-138 495.4 440 60.7
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 6.0e-138 495.4 440 60.7
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 7.8e-138 495.0 499 55.5
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 1.3e-137 494.2 455 59.1
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.7e-137 493.8 423 62.4
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 3.0e-137 493.0 446 60.5
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 3.0e-137 493.0 458 58.1
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 3.9e-137 492.7 455 59.6
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 3.9e-137 492.7 423 62.2
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 8.6e-137 491.5 438 60.0
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 8.6e-137 491.5 437 60.9
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 8.6e-137 491.5 474 56.5
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 1.1e-136 491.1 418 62.4
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 1.5e-136 490.7 475 56.8
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 2.5e-136 490.0 425 62.6
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 2.5e-136 490.0 430 60.7
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.5e-136 490.0 439 59.9
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 2.5e-136 490.0 455 58.7
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.3e-136 489.6 430 60.9
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.3e-136 489.6 430 60.7
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.3e-136 489.6 430 60.7
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 3.3e-136 489.6 433 61.2
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 3.3e-136 489.6 438 61.0
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 4.3e-136 489.2 452 58.8
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 5.6e-136 488.8 486 56.0
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 7.3e-136 488.4 441 60.8
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.2e-135 487.6 418 62.9
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 1.6e-135 487.3 425 61.6
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 1.6e-135 487.3 482 56.4
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 2.8e-135 486.5 455 58.7
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 2.8e-135 486.5 436 59.4
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 2.8e-135 486.5 438 58.7
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 3.6e-135 486.1 440 59.8
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 4.7e-135 485.7 436 60.6
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 8.1e-135 485.0 440 58.9
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 1.1e-134 484.6 436 59.4
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.4e-134 484.2 499 54.9
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 1.4e-134 484.2 436 59.4
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 1.8e-134 483.8 430 60.7
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 2.3e-134 483.4 447 58.6
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 2.3e-134 483.4 438 59.4
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 3.1e-134 483.0 429 60.1
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 3.1e-134 483.0 455 57.6
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 3.1e-134 483.0 491 55.4
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 3.1e-134 483.0 447 57.9
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 3.1e-134 483.0 412 62.4
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 5.2e-134 482.3 458 56.6
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 6.8e-134 481.9 535 51.8
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 8.9e-134 481.5 440 59.3
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 8.9e-134 481.5 420 61.2
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 1.2e-133 481.1 442 58.6
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.5e-133 480.7 455 58.0
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 1.5e-133 480.7 441 59.2
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 2.0e-133 480.3 438 58.9
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 2.0e-133 480.3 441 59.2
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 2.0e-133 480.3 430 59.8
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 2.0e-133 480.3 485 55.5
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 7.6e-133 478.4 429 59.9
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 9.9e-133 478.0 440 59.3
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 9.9e-133 478.0 440 59.3
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 1.7e-132 477.2 438 58.4
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 1.7e-132 477.2 431 58.7
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 1.7e-132 477.2 440 58.4
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 1.7e-132 477.2 507 53.5
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 2.9e-132 476.5 438 58.9
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 2.9e-132 476.5 503 52.9
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 2.9e-132 476.5 441 58.0
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 3.7e-132 476.1 440 59.3
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 3.7e-132 476.1 441 59.4
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 6.4e-132 475.3 440 59.1
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 6.4e-132 475.3 441 59.4
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 6.4e-132 475.3 441 59.4
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 6.4e-132 475.3 440 58.6
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 8.3e-132 474.9 441 59.2
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 1.4e-131 474.2 440 59.1
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 1.9e-131 473.8 418 61.7
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 4.1e-131 472.6 433 58.7
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 4.1e-131 472.6 420 61.2
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 5.4e-131 472.2 444 57.7
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 1.6e-130 470.7 441 57.6
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 2.1e-130 470.3 430 59.8
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 3.5e-130 469.5 405 61.0
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 6.0e-130 468.8 404 61.4
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 6.0e-130 468.8 443 57.3
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 6.0e-130 468.8 461 56.4
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.7e-129 467.2 438 57.8
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 8.6e-129 464.9 441 57.6
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 1.5e-128 464.2 444 57.2
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.9e-128 463.8 423 59.6
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 2.5e-128 463.4 486 53.9
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 5.6e-128 462.2 418 59.6
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 9.6e-128 461.5 420 60.0
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 9.6e-128 461.5 444 57.0
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 1.2e-127 461.1 427 59.0
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 1.2e-127 461.1 427 59.0
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 1.2e-127 461.1 453 56.5
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 2.8e-127 459.9 484 55.0
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 3.6e-127 459.5 427 59.3
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 4.7e-127 459.1 418 59.8
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 1.1e-126 458.0 440 57.7
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 8.9e-126 454.9 441 55.6
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 3.8e-124 449.5 496 52.2
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 4.2e-123 446.0 425 55.1
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 2.7e-122 443.4 414 58.5
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 9.6e-120 434.9 362 64.6
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 4.9e-116 422.5 440 54.8
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 1.9e-115 420.6 449 52.1
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 1.9e-115 420.6 449 52.1
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 1.2e-114 417.9 421 54.6
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 6.2e-111 405.6 431 54.5
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 2.5e-104 383.6 438 49.3
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 7.4e-88 328.9 375 52.5
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 1.7e-79 301.2 436 41.7
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 1.0e-76 292.0 227 68.7
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 1.1e-75 288.5 285 53.7
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 7.2e-75 285.8 302 50.0
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 6.1e-66 256.1 386 39.1
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 6.1e-58 229.6 174 71.8
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 6.1e-58 229.6 457 37.9
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 1.8e-54 218.0 416 34.6
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 3.1e-54 217.2 410 33.2
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 5.9e-53 213.0 165 69.1
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 2.1e-50 204.5 348 35.6
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 3.6e-50 203.8 155 70.3
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.7e-47 193.7 286 43.7
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 7.0e-46 189.5 209 51.2
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 2.0e-45 188.0 202 50.0
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 4.9e-31 140.2 188 46.3
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.5e-27 128.6 124 53.2
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.9e-27 128.3 132 51.5
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 6.8e-25 119.8 139 48.9
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 1.3e-23 115.5 269 33.5
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.4e-17 95.5 81 58.0
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 3.1e-17 94.4 410 25.6
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 3.4e-16 90.9 99 52.5
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 1.2e-13 82.4 111 34.2
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 3.2e-06 57.8 68 50.0


User provided reference genes

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