Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 1.3e-97 359.8 190 100.0
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 1.5e-21 107.1 170 38.8
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 3.4e-21 105.9 162 39.5
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 5.9e-21 105.1 172 39.0
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 7.7e-21 104.8 170 38.2
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 1.3e-20 104.0 173 39.3
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 1.3e-20 104.0 173 39.3
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 1.7e-20 103.6 172 39.0
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 3.8e-20 102.4 164 40.2
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 3.8e-20 102.4 170 37.1
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 6.5e-20 101.7 164 39.6
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 1.1e-19 100.9 171 38.0
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 1.4e-19 100.5 172 37.8
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 1.4e-19 100.5 170 37.1
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 1.4e-19 100.5 162 37.7
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 1.4e-19 100.5 174 37.9
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 1.9e-19 100.1 166 38.0
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 2.5e-19 99.8 166 38.6
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 2.5e-19 99.8 170 37.6
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 3.2e-19 99.4 169 37.3
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 5.5e-19 98.6 166 36.7
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 7.2e-19 98.2 166 36.1
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 7.2e-19 98.2 166 41.0
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 1.2e-18 97.4 170 35.9
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 2.7e-18 96.3 162 37.0
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 2.7e-18 96.3 186 37.6
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 2.7e-18 96.3 176 36.9
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 2.7e-18 96.3 162 37.7
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 4.6e-18 95.5 170 35.3
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.0e-17 94.4 170 34.1
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 1.0e-17 94.4 169 35.5
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 2.3e-17 93.2 170 35.3
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 3.0e-17 92.8 167 32.3
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 3.0e-17 92.8 129 41.9
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 3.0e-17 92.8 166 33.7
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 3.0e-17 92.8 169 35.5
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 5.1e-17 92.0 165 37.6
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 5.1e-17 92.0 162 35.8
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 6.7e-17 91.7 165 32.7
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 6.7e-17 91.7 166 33.7
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 8.8e-17 91.3 172 36.0
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 8.8e-17 91.3 170 35.9
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.1e-16 90.9 166 34.3
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.5e-16 90.5 161 35.4
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 2.0e-16 90.1 169 36.1
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 3.3e-16 89.4 167 32.9
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 3.3e-16 89.4 166 31.9
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 4.3e-16 89.0 162 37.7
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 5.7e-16 88.6 162 34.0
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 5.7e-16 88.6 162 34.0
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 5.7e-16 88.6 178 32.6
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 5.7e-16 88.6 178 33.1
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 5.7e-16 88.6 174 32.2
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 9.7e-16 87.8 167 34.1
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 1.3e-15 87.4 168 37.5
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 1.7e-15 87.0 162 37.0
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 2.2e-15 86.7 162 34.0
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 2.2e-15 86.7 171 34.5
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 2.8e-15 86.3 169 32.0
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 3.7e-15 85.9 169 33.7
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 4.8e-15 85.5 166 31.9
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 4.8e-15 85.5 162 34.0
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 4.8e-15 85.5 166 33.1
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 6.3e-15 85.1 178 32.6
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 6.3e-15 85.1 136 34.6
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 6.3e-15 85.1 169 34.9
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 8.2e-15 84.7 136 40.4
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 8.2e-15 84.7 166 31.9
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 8.2e-15 84.7 168 34.5
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 8.2e-15 84.7 179 32.4
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 8.2e-15 84.7 162 33.3
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 8.2e-15 84.7 166 33.1
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.1e-14 84.3 165 35.8
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.4e-14 84.0 166 33.7
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 1.4e-14 84.0 181 33.7
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 1.8e-14 83.6 133 36.1
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 1.8e-14 83.6 169 34.3
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 2.4e-14 83.2 168 33.9
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 2.4e-14 83.2 164 34.8
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 9.1e-14 81.3 165 32.1
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 9.1e-14 81.3 160 31.9
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 1.2e-13 80.9 174 29.9
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 1.5e-13 80.5 170 33.5
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 1.5e-13 80.5 170 33.5
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 2.0e-13 80.1 162 34.0
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 4.5e-13 79.0 202 32.2
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 5.9e-13 78.6 136 33.8
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 1.3e-12 77.4 162 35.8
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.9e-12 76.3 217 30.4
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.8e-12 75.9 134 35.1
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 6.5e-12 75.1 132 35.6
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 8.5e-12 74.7 147 32.0
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 1.1e-11 74.3 162 35.2
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 2.5e-11 73.2 147 30.6
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 3.2e-11 72.8 148 33.8
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 3.2e-11 72.8 147 31.3
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 3.2e-11 72.8 206 29.1
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 5.5e-11 72.0 162 30.2
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 7.2e-11 71.6 162 29.6
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 1.2e-10 70.9 134 35.8
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 1.2e-10 70.9 161 31.1
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.2e-10 70.9 124 37.1
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 1.6e-10 70.5 124 33.9
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.6e-10 70.5 124 34.7
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 2.1e-10 70.1 163 30.7
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.7e-10 69.7 155 31.6
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 2.7e-10 69.7 170 28.8
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 3.6e-10 69.3 162 32.7
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 4.7e-10 68.9 133 33.1
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 4.7e-10 68.9 214 28.0
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 6.1e-10 68.6 139 33.1
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 6.1e-10 68.6 137 36.5
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 6.1e-10 68.6 135 32.6
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 1.4e-09 67.4 124 34.7
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 1.4e-09 67.4 124 34.7
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 1.4e-09 67.4 124 32.3
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 2.3e-09 66.6 124 35.5
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 3.9e-09 65.9 136 32.4
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 5.1e-09 65.5 124 35.5
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 8.8e-09 64.7 124 33.1
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.1e-08 64.3 117 34.2
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 1.5e-08 63.9 124 33.9
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 2.6e-08 63.2 131 31.3
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 5.7e-08 62.0 132 30.3
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 2.8e-07 59.7 120 32.5
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.8e-07 59.7 136 33.1
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 2.4e-06 56.6 124 32.3
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 3.1e-06 56.2 144 29.9
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 5.3e-06 55.5 74 40.5
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 7.0e-06 55.1 81 40.7


User provided reference genes

Program Settings