Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 8.2e-140 500.4 249 100.0
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 7.6e-77 291.2 241 60.6
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 1.1e-72 277.3 210 60.5
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 1.8e-70 270.0 173 70.5
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 5.8e-69 265.0 154 76.0
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 6.6e-65 251.5 180 64.4
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 8.7e-65 251.1 178 66.3
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 1.9e-64 250.0 181 63.0
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 4.3e-64 248.8 180 63.3
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 5.6e-64 248.4 172 65.7
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 5.6e-64 248.4 174 64.9
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 9.6e-64 247.7 178 63.5
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 1.6e-63 246.9 174 63.8
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 2.1e-63 246.5 171 67.3
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 2.8e-63 246.1 171 66.7
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 3.6e-63 245.7 180 62.8
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 6.2e-63 245.0 174 64.4
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 1.1e-62 244.2 175 62.3
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 1.8e-62 243.4 183 61.2
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 1.8e-62 243.4 216 56.0
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 2.4e-62 243.0 167 65.9
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 3.1e-62 242.7 182 61.0
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 3.1e-62 242.7 174 64.4
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 4.0e-62 242.3 172 62.8
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 4.0e-62 242.3 172 66.3
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 6.9e-62 241.5 173 62.4
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 1.2e-61 240.7 179 63.1
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 2.0e-61 240.0 179 63.1
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 2.0e-61 240.0 172 65.7
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 4.5e-61 238.8 172 64.5
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 5.8e-61 238.4 179 61.5
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 7.6e-61 238.0 179 62.6
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 7.6e-61 238.0 172 62.8
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 9.9e-61 237.7 175 64.0
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 2.2e-60 236.5 179 61.5
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 2.2e-60 236.5 172 64.0
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 2.9e-60 236.1 172 63.4
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 3.8e-60 235.7 172 63.4
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 3.8e-60 235.7 171 62.6
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 6.4e-60 235.0 179 60.9
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 1.4e-59 233.8 218 52.8
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 1.4e-59 233.8 177 61.0
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 2.4e-59 233.0 171 63.2
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 4.2e-59 232.3 168 63.1
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 5.4e-59 231.9 177 62.1
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.4e-59 231.9 171 64.3
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 5.4e-59 231.9 180 59.4
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 7.1e-59 231.5 172 66.3
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 7.1e-59 231.5 152 67.8
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 7.1e-59 231.5 179 60.3
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 9.3e-59 231.1 179 62.0
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.2e-58 230.7 188 58.5
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 1.2e-58 230.7 180 59.4
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 1.2e-58 230.7 180 60.6
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 1.6e-58 230.3 199 56.8
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 2.1e-58 229.9 177 60.5
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.5e-58 229.2 171 63.7
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 3.5e-58 229.2 172 62.2
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.0e-57 227.6 171 63.2
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 1.0e-57 227.6 168 61.9
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 1.8e-57 226.9 236 51.3
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 2.3e-57 226.5 171 63.2
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 3.0e-57 226.1 172 61.6
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 5.1e-57 225.3 178 61.8
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 6.7e-57 224.9 172 61.0
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 8.7e-57 224.6 171 62.0
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 1.1e-56 224.2 168 59.5
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 1.9e-56 223.4 171 63.2
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 2.5e-56 223.0 181 57.5
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 4.3e-56 222.2 181 57.5
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 7.4e-56 221.5 172 59.9
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 1.3e-55 220.7 214 51.9
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 1.3e-55 220.7 191 55.5
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 1.3e-55 220.7 172 59.3
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 6.2e-55 218.4 200 54.0
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 8.1e-55 218.0 181 56.4
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 1.4e-54 217.2 172 59.3
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 1.2e-53 214.2 154 67.5
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.2e-53 214.2 151 65.6
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 2.0e-53 213.4 172 60.5
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 2.0e-53 213.4 172 59.9
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 2.0e-53 213.4 172 60.5
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 2.6e-53 213.0 193 55.4
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 3.4e-53 212.6 172 59.9
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 3.4e-53 212.6 172 59.9
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 7.6e-53 211.5 171 60.2
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 1.3e-52 210.7 172 60.5
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 2.2e-52 209.9 160 60.6
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 2.2e-52 209.9 160 60.6
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 3.8e-52 209.1 200 53.5
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 8.4e-52 208.0 148 64.9
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 1.1e-51 207.6 171 60.2
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 1.9e-51 206.8 171 59.1
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 2.4e-51 206.5 171 58.5
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 7.1e-51 204.9 172 58.1
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 9.3e-51 204.5 183 55.7
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 9.3e-51 204.5 150 60.7
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.2e-50 204.1 150 63.3
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.2e-50 204.1 158 58.9
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 5.3e-46 188.7 173 54.3
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 3.4e-45 186.0 173 54.3
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 2.9e-44 183.0 170 53.5
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 2.5e-43 179.9 179 53.6
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 3.2e-43 179.5 161 55.3
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 3.0e-41 172.9 174 48.9
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 1.6e-39 167.2 150 55.3
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 3.7e-39 166.0 108 69.4
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 8.2e-39 164.9 189 43.9
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 3.1e-38 162.9 249 41.4
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 4.6e-34 149.1 180 44.4
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 7.9e-34 148.3 119 56.3
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 3.0e-33 146.4 107 62.6
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 2.5e-32 143.3 107 61.7
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 1.3e-31 141.0 117 59.8
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 2.8e-31 139.8 87 72.4
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 1.8e-30 137.1 122 56.6
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.2e-28 130.2 90 67.8
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 3.2e-27 126.3 90 65.6
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 3.0e-25 119.8 120 51.7
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 9.7e-24 114.8 76 65.8
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 7.7e-21 105.1 100 47.0
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 1.1e-19 101.3 96 51.0
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 4.2e-19 99.4 137 44.5
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 3.6e-18 96.3 96 49.0
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 2.2e-15 87.0 69 56.5
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 1.1e-14 84.7 79 54.4
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 5.9e-13 79.0 54 66.7
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 5.9e-13 79.0 72 50.0
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 7.2e-11 72.0 93 39.8
Cre16.g674200 Chlamydomonas reinhardtii HOM05D020894 ORTHO05D021334 8.8e-09 65.1 150 28.7
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 1.3e-07 61.2 68 45.6


User provided reference genes

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