Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 0.0e+00 1744.2 899 100.0
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 5.9e-180 635.6 907 44.0
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 3.0e-160 570.1 909 41.5
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 6.6e-147 525.8 921 36.9
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 1.9e-146 524.2 921 36.8
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 2.6e-143 513.8 927 37.2
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 3.7e-142 510.0 895 40.1
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 6.6e-139 499.2 914 37.5
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 1.5e-138 498.0 918 36.3
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 4.3e-138 496.5 917 37.6
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 7.3e-138 495.7 923 38.0
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 9.5e-138 495.4 924 37.1
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 8.1e-137 492.3 919 36.2
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 1.1e-136 491.9 937 36.1
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 5.2e-136 489.6 919 35.5
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 6.8e-136 489.2 926 36.8
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 1.5e-135 488.0 880 36.9
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 4.4e-135 486.5 930 36.7
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 3.7e-134 483.4 932 36.8
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 6.4e-134 482.6 920 37.1
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 6.4e-134 482.6 923 35.6
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 1.4e-133 481.5 917 35.4
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 1.4e-133 481.5 924 36.9
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 4.1e-133 479.9 936 35.4
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 7.1e-133 479.2 931 36.4
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 1.6e-132 478.0 922 35.8
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 4.6e-132 476.5 935 36.9
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 4.6e-132 476.5 922 35.4
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 5.1e-131 473.0 917 35.3
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 6.6e-131 472.6 919 36.2
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 1.1e-130 471.9 934 36.0
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 3.3e-130 470.3 928 36.2
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 3.3e-130 470.3 914 35.6
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 4.3e-130 469.9 940 34.9
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 9.6e-130 468.8 924 35.0
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 2.8e-129 467.2 971 34.1
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 3.6e-129 466.8 934 34.9
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 4.7e-129 466.5 920 35.3
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 3.1e-128 463.8 924 34.8
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 3.1e-128 463.8 936 36.1
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 5.2e-128 463.0 913 35.4
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 2.0e-127 461.1 890 36.6
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 2.0e-127 461.1 939 35.7
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 2.6e-127 460.7 932 35.0
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 5.8e-127 459.5 905 34.7
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 7.6e-127 459.1 883 37.5
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 9.9e-127 458.8 922 35.8
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 1.3e-126 458.4 1008 34.4
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 4.9e-126 456.4 903 35.4
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 6.4e-126 456.1 923 34.3
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 3.5e-124 450.3 913 35.4
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 3.5e-124 450.3 938 34.0
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 6.0e-124 449.5 909 34.4
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 6.0e-124 449.5 920 35.1
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 1.0e-123 448.7 906 34.7
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 1.3e-123 448.4 917 34.6
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 1.7e-123 448.0 941 33.9
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 3.0e-123 447.2 933 35.2
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 9.6e-122 442.2 910 34.0
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 9.6e-122 442.2 933 33.4
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 1.1e-120 438.7 906 33.9
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 1.4e-120 438.3 930 34.9
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 3.1e-120 437.2 904 34.1
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 3.4e-119 433.7 923 34.0
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 3.4e-119 433.7 909 33.6
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 5.8e-119 433.0 904 33.5
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 7.6e-119 432.6 913 33.5
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 9.9e-119 432.2 965 32.7
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 1.3e-118 431.8 919 33.1
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 1.7e-118 431.4 919 33.1
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 2.2e-118 431.0 910 34.2
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 2.2e-118 431.0 852 35.9
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 3.8e-118 430.3 919 33.1
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 9.3e-117 425.6 928 33.3
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 2.7e-116 424.1 1084 31.8
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 6.0e-116 422.9 918 33.4
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 1.3e-115 421.8 1003 32.6
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 8.7e-115 419.1 646 40.4
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 1.3e-113 415.2 915 33.8
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.6e-113 414.8 918 33.8
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 2.1e-113 414.5 947 32.6
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 4.8e-113 413.3 917 32.9
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 2.4e-112 411.0 1009 31.5
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 2.6e-111 407.5 935 32.8
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 7.6e-111 406.0 905 33.6
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 3.8e-110 403.7 1075 31.4
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 2.4e-109 401.0 887 33.9
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 2.1e-108 397.9 923 32.6
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 2.7e-108 397.5 678 37.0
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 1.8e-107 394.8 905 32.8
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 1.8e-107 394.8 948 33.2
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 1.8e-104 384.8 646 36.8
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 1.3e-102 378.6 641 37.6
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-95 354.8 572 38.8
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 2.7e-92 344.4 1149 27.9
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 2.4e-88 331.3 772 34.8
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.2e-87 328.9 557 37.7
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 1.6e-84 318.5 545 36.0
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 2.7e-84 317.8 513 38.6
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 3.8e-78 297.4 736 32.3
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 4.4e-74 283.9 411 40.4
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 5.9e-71 273.5 791 30.0
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 4.2e-69 267.3 649 33.6
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 7.5e-66 256.5 430 36.5
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 1.6e-63 248.8 334 41.0
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 2.0e-63 248.4 309 42.7
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 8.5e-62 243.0 259 49.4
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.5e-61 242.3 463 37.1
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 5.2e-59 233.8 289 43.3
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 3.5e-55 221.1 593 31.2
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 3.8e-54 217.6 623 31.9
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 4.1e-48 197.6 232 45.3
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 7.0e-48 196.8 497 30.6
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 5.9e-47 193.7 223 46.6
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 2.9e-41 174.9 416 35.3
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 7.3e-37 160.2 277 38.6
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 2.8e-36 158.3 667 26.1
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 3.5e-31 141.4 438 29.5
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 2.3e-30 138.7 143 45.5
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 3.9e-30 137.9 207 37.2
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 1.4e-24 119.4 126 46.0
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 7.1e-24 117.1 348 30.5
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 2.0e-18 99.0 92 52.2
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 5.8e-18 97.4 135 41.5
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 4.1e-16 91.3 474 25.5
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 3.0e-14 85.1 148 39.2
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 4.7e-12 77.8 80 51.2
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.3e-09 69.7 136 38.2
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 3.8e-09 68.2 117 35.9
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 7.1e-08 63.9 85 47.1


User provided reference genes

Program Settings