Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.3e-160 569.7 286 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 5.3e-74 282.0 270 53.7
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 7.1e-71 271.6 267 52.1
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 3.7e-67 259.2 269 49.4
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.4e-66 256.5 262 52.7
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 3.4e-57 226.1 272 42.3
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 4.6e-54 215.7 267 42.7
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 2.3e-53 213.4 268 43.3
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 2.4e-50 203.4 271 36.5
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.4e-50 203.4 276 38.4
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 4.1e-50 202.6 272 38.6
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 9.0e-50 201.4 273 38.1
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 1.2e-49 201.1 271 41.0
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 2.0e-49 200.3 266 40.6
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 3.4e-49 199.5 270 40.4
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 5.9e-49 198.7 273 38.1
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 5.9e-49 198.7 271 36.2
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.0e-48 198.0 272 35.7
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 3.8e-48 196.1 262 40.1
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 5.0e-48 195.7 272 36.8
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 6.5e-48 195.3 265 40.4
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 6.5e-48 195.3 275 38.2
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 8.5e-48 194.9 263 40.7
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.1e-47 194.5 272 36.4
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.4e-47 194.1 268 36.9
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 2.5e-47 193.4 284 39.1
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 2.5e-47 193.4 265 38.9
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 5.5e-47 192.2 263 37.3
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 5.5e-47 192.2 272 36.0
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 5.5e-47 192.2 263 37.6
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 5.5e-47 192.2 263 37.3
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 5.5e-47 192.2 270 36.7
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 5.5e-47 192.2 265 39.2
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 7.2e-47 191.8 259 39.8
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 7.2e-47 191.8 273 38.8
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 9.4e-47 191.4 264 38.6
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 9.4e-47 191.4 268 37.3
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 1.6e-46 190.7 276 38.0
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 2.1e-46 190.3 270 36.7
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 2.7e-46 189.9 285 39.6
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 2.7e-46 189.9 268 39.6
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 4.6e-46 189.1 274 35.4
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 6.1e-46 188.7 274 36.9
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.0e-45 188.0 276 36.6
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.0e-45 188.0 247 41.3
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.0e-45 188.0 255 42.4
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 1.0e-45 188.0 278 37.1
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 1.0e-45 188.0 261 37.9
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 1.4e-45 187.6 271 35.8
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.4e-45 187.6 270 36.3
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.4e-45 187.6 267 37.8
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 1.8e-45 187.2 263 38.8
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.8e-45 187.2 272 37.9
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 1.8e-45 187.2 268 39.6
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 2.3e-45 186.8 276 36.6
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 2.3e-45 186.8 278 37.4
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 3.0e-45 186.4 276 36.6
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 3.9e-45 186.0 267 37.8
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 3.9e-45 186.0 272 37.1
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 3.9e-45 186.0 263 38.4
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.1e-45 185.7 267 38.6
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.1e-45 185.7 267 38.6
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 8.8e-45 184.9 281 36.3
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 1.1e-44 184.5 265 36.6
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 1.5e-44 184.1 268 38.1
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 2.6e-44 183.3 268 36.6
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 3.3e-44 183.0 274 35.0
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 3.3e-44 183.0 284 34.2
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 3.3e-44 183.0 272 36.8
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 4.4e-44 182.6 272 36.4
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 5.7e-44 182.2 283 36.0
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 5.7e-44 182.2 268 38.1
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 5.7e-44 182.2 273 35.2
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 7.4e-44 181.8 275 36.7
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 9.7e-44 181.4 280 35.7
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 1.3e-43 181.0 278 34.5
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 1.3e-43 181.0 278 34.5
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 2.2e-43 180.3 263 38.4
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 2.2e-43 180.3 275 38.2
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 2.8e-43 179.9 283 34.6
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 3.7e-43 179.5 284 33.8
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 3.7e-43 179.5 276 35.5
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 3.7e-43 179.5 268 36.2
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 6.3e-43 178.7 285 33.7
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 6.3e-43 178.7 271 36.9
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 8.2e-43 178.3 273 35.9
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.8e-42 177.2 285 32.6
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 1.8e-42 177.2 284 34.5
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 4.1e-42 176.0 272 35.3
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 5.3e-42 175.6 277 35.0
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 5.3e-42 175.6 270 34.1
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 5.3e-42 175.6 277 35.7
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 9.1e-42 174.9 283 33.9
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 1.2e-41 174.5 277 34.7
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 1.2e-41 174.5 279 34.4
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 2.6e-41 173.3 279 35.8
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 3.4e-41 172.9 265 37.0
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 5.9e-41 172.2 265 36.2
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.0e-40 171.4 272 34.2
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.0e-40 171.4 265 36.2
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.3e-40 171.0 277 33.2
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 2.2e-40 170.2 269 34.2
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 3.8e-40 169.5 270 33.7
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 5.0e-40 169.1 286 32.9
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 5.0e-40 169.1 285 31.9
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 6.5e-40 168.7 272 33.1
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 8.5e-40 168.3 269 33.5
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 1.4e-39 167.5 266 32.0
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 1.4e-39 167.5 281 36.3
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 1.9e-39 167.2 270 33.7
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 2.5e-39 166.8 197 44.7
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.5e-39 166.8 267 33.3
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 3.2e-39 166.4 283 33.6
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 3.2e-39 166.4 267 33.3
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 7.2e-39 165.2 262 35.1
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 1.2e-38 164.5 268 32.8
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.1e-38 163.7 287 34.1
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.1e-38 163.7 267 33.7
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 6.7e-37 158.7 232 35.8
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.4e-36 155.2 203 41.4
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.4e-36 155.2 203 41.4
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 1.7e-35 154.1 320 30.3
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.7e-35 154.1 267 34.1
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 4.8e-35 152.5 203 37.4
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 4.8e-35 152.5 275 32.4
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 3.1e-34 149.8 234 33.8
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 4.1e-34 149.4 240 35.4
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 3.8e-32 142.9 168 43.5
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 3.8e-32 142.9 176 41.5
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 5.0e-32 142.5 244 32.8
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 5.0e-32 142.5 251 33.1
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.0e-29 134.8 262 33.2
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 8.8e-29 131.7 205 37.1
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 3.3e-28 129.8 259 31.3
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 4.1e-26 122.9 135 48.9
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 5.9e-25 119.0 179 37.4
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.1e-23 114.8 175 36.0
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 8.0e-22 108.6 266 28.6
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 7.7e-17 92.0 232 27.6
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 2.2e-16 90.5 92 48.9
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 4.2e-15 86.3 257 26.8
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 5.5e-15 85.9 120 37.5
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 3.6e-14 83.2 230 27.4
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 4.4e-12 76.3 203 27.1


User provided reference genes

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