Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 4.8e-143 511.1 255 100.0
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.6e-106 389.8 241 74.7
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 2.3e-105 386.0 240 75.8
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 2.3e-105 386.0 244 73.8
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 5.1e-105 384.8 242 74.8
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 6.7e-105 384.4 242 74.8
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.1e-104 383.6 242 74.4
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 2.0e-104 382.9 240 75.8
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 2.6e-104 382.5 242 74.4
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 3.3e-104 382.1 242 74.4
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 4.4e-104 381.7 242 74.4
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 4.4e-104 381.7 242 74.4
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 7.4e-104 380.9 242 74.8
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 7.4e-104 380.9 242 74.0
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 9.7e-104 380.6 247 71.7
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 1.3e-103 380.2 242 73.6
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.7e-103 379.8 242 73.6
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 1.7e-103 379.8 242 73.1
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 1.7e-103 379.8 240 75.4
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 1.7e-103 379.8 242 73.6
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 2.2e-103 379.4 242 73.6
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 2.2e-103 379.4 242 73.6
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 2.2e-103 379.4 240 73.8
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 2.2e-103 379.4 242 73.6
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 2.2e-103 379.4 242 73.6
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 2.8e-103 379.0 242 74.0
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 2.8e-103 379.0 246 72.0
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 3.7e-103 378.6 242 73.6
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.7e-103 378.6 246 71.5
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 4.8e-103 378.3 242 72.7
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 6.3e-103 377.9 248 71.0
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 6.3e-103 377.9 242 72.3
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 8.2e-103 377.5 247 71.3
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 8.2e-103 377.5 246 72.0
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 8.2e-103 377.5 242 72.7
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 1.1e-102 377.1 242 74.0
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.1e-102 377.1 250 70.8
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.1e-102 377.1 242 72.7
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.1e-102 377.1 242 73.6
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 1.8e-102 376.3 250 70.4
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 2.4e-102 375.9 242 71.9
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 2.4e-102 375.9 242 72.7
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 2.4e-102 375.9 240 74.6
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 3.1e-102 375.6 242 73.1
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 4.1e-102 375.2 242 72.7
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 4.1e-102 375.2 242 72.3
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 4.1e-102 375.2 249 71.1
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 4.1e-102 375.2 242 71.9
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 7.0e-102 374.4 242 73.1
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 9.1e-102 374.0 242 73.1
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 1.2e-101 373.6 242 72.7
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 2.0e-101 372.9 242 72.7
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.0e-101 372.9 242 71.9
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 2.0e-101 372.9 242 73.1
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 2.6e-101 372.5 242 71.9
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 3.5e-101 372.1 242 72.7
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 3.5e-101 372.1 242 71.9
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 4.5e-101 371.7 242 72.7
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 4.5e-101 371.7 242 73.1
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 4.5e-101 371.7 249 70.3
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 4.5e-101 371.7 249 70.3
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 5.9e-101 371.3 242 72.3
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 5.9e-101 371.3 242 71.9
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 7.7e-101 370.9 242 72.3
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 7.7e-101 370.9 242 71.9
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.0e-100 370.5 242 71.9
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 1.0e-100 370.5 242 71.9
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 1.7e-100 369.8 246 70.3
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 2.9e-100 369.0 262 67.9
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 8.5e-100 367.5 247 71.3
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 8.5e-100 367.5 242 71.9
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.9e-99 366.3 240 72.1
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 2.5e-99 365.9 242 71.1
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 2.5e-99 365.9 242 71.1
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 2.5e-99 365.9 242 71.1
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 4.2e-99 365.2 242 71.1
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 4.2e-99 365.2 242 71.1
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.2e-99 365.2 250 69.6
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 7.2e-99 364.4 242 70.7
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 9.4e-99 364.0 242 71.1
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 1.2e-98 363.6 242 71.1
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 1.2e-98 363.6 242 71.1
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 1.6e-98 363.2 233 74.2
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 1.6e-98 363.2 242 71.1
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 2.1e-98 362.8 242 70.2
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 3.6e-98 362.1 240 71.2
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 1.1e-96 357.1 252 69.4
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 2.6e-96 355.9 265 65.3
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 3.3e-96 355.5 289 61.6
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 4.4e-96 355.1 242 69.0
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 7.4e-96 354.4 226 72.6
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.3e-95 353.6 233 69.5
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 1.7e-95 353.2 242 68.6
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 5.3e-94 348.2 244 66.4
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 2.6e-93 345.9 289 59.9
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 7.2e-91 337.8 249 64.7
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 4.7e-90 335.1 206 75.2
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 8.8e-89 330.9 238 66.0
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 2.0e-88 329.7 244 65.6
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 8.3e-87 324.3 217 71.4
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 2.7e-85 319.3 242 64.5
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 2.9e-84 315.8 247 63.6
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.2e-82 310.5 187 79.7
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 1.8e-81 306.6 242 63.6
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 3.4e-80 302.4 242 62.8
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 9.8e-80 300.8 229 65.1
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 2.5e-75 286.2 188 73.4
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 4.7e-74 282.0 240 55.0
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.0e-73 278.9 194 69.6
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 3.5e-69 265.8 173 70.5
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.0e-68 264.2 316 45.9
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 9.5e-67 257.7 249 51.4
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 8.3e-63 244.6 193 60.6
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 2.4e-62 243.0 151 77.5
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.2e-61 240.7 151 76.8
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 1.6e-58 230.3 176 63.1
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 6.2e-50 201.8 192 52.1
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 5.2e-49 198.7 211 52.1
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 4.1e-46 189.1 249 44.2
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.1e-42 176.8 129 60.5
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 1.4e-41 174.1 242 40.9
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 4.4e-40 169.1 99 80.8
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 4.9e-39 165.6 242 35.5
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 7.1e-38 161.8 105 67.6
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 4.0e-33 146.0 100 63.0
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 5.8e-32 142.1 92 66.3
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 3.2e-30 136.3 90 67.8
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 5.4e-30 135.6 158 49.4
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 7.3e-27 125.2 90 60.0
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 2.2e-23 113.6 95 61.1
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.9e-14 84.0 54 57.4
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 2.5e-14 83.6 100 44.0
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 5.5e-14 82.4 55 74.5
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 1.3e-12 77.8 44 75.0
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 1.9e-11 73.9 55 63.6
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 5.7e-11 72.4 137 36.5
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 3.4e-08 63.2 30 86.7
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 9.3e-06 55.1 55 56.4


User provided reference genes

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