Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 0.0e+00 2414.0 1265 100.0
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 0.0e+00 1277.7 1241 56.2
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1247.3 1128 59.3
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1116.3 1039 56.3
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1101.7 1051 54.7
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1097.4 1088 52.6
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1097.0 1025 55.1
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1086.6 1123 53.1
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1086.2 1027 54.5
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1076.6 1077 52.3
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 0.0e+00 1075.1 1154 52.2
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 8.7e-312 1073.9 1086 51.7
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 1.1e-309 1067.0 1064 53.7
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 1.9e-309 1066.2 1018 53.5
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 1.6e-308 1063.1 1014 54.1
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 2.8e-308 1062.4 1025 53.1
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 3.6e-308 1062.0 1069 52.2
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 4.7e-308 1061.6 1071 52.5
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 8.0e-308 1060.8 1063 52.5
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 1.4e-307 1060.1 1061 52.4
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 4.0e-307 1058.5 1063 52.4
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 6.8e-307 1057.7 1143 51.3
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 1.3e-305 1053.5 1038 52.5
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 1.1e-304 1050.4 959 55.0
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 1.4e-304 1050.0 969 55.1
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 8.6e-302 1040.8 1081 51.3
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 1.2e-300 1036.9 1119 49.9
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 1.6e-300 1036.6 1078 50.9
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 2.8e-300 1035.8 1059 51.7
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 4.7e-300 1035.0 1083 50.0
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 3.4e-298 1028.9 1036 52.2
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 4.4e-298 1028.5 1001 51.2
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 9.8e-298 1027.3 1001 52.6
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 3.7e-297 1025.4 1099 50.7
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 3.2e-296 1022.3 1059 51.4
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 7.0e-296 1021.1 1072 50.2
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 2.0e-295 1019.6 1131 48.9
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 1.0e-294 1017.3 1032 51.6
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 2.3e-294 1016.1 1080 50.4
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 6.6e-294 1014.6 1074 49.3
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 1.5e-293 1013.4 1012 52.1
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 1.2e-292 1010.4 1071 49.9
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 4.7e-292 1008.4 1121 49.0
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 8.9e-291 1004.2 1050 51.0
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 3.4e-290 1002.3 1088 50.2
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 3.4e-290 1002.3 1077 49.7
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 1.3e-289 1000.3 1066 50.0
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 3.7e-289 998.8 1115 48.7
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 1.4e-288 996.9 998 52.1
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 1.9e-288 996.5 1115 48.2
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 9.2e-288 994.2 1078 49.4
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 3.5e-287 992.3 1088 49.3
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 4.6e-287 991.9 1063 50.3
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 1.7e-286 989.9 1003 51.8
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 3.0e-286 989.2 1059 49.1
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 5.0e-286 988.4 1070 49.6
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 2.5e-285 986.1 1062 50.1
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 3.3e-285 985.7 1058 50.4
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 4.3e-285 985.3 1094 48.5
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 5.6e-285 984.9 1052 50.1
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 9.5e-285 984.2 1004 50.2
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 2.8e-284 982.6 1005 51.6
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 4.7e-284 981.9 1062 49.2
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 6.2e-284 981.5 1022 49.4
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 1.1e-283 980.7 1058 50.3
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 1.8e-283 979.9 1050 49.2
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 2.3e-283 979.5 1004 50.2
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 5.2e-283 978.4 1053 50.0
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 8.9e-283 977.6 1034 50.3
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 1.2e-282 977.2 1079 48.8
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 2.6e-282 976.1 997 51.0
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 3.4e-282 975.7 1060 49.6
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 5.8e-282 974.9 1011 50.9
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 5.8e-282 974.9 1062 49.5
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 5.8e-282 974.9 1037 48.9
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 4.9e-281 971.8 1010 50.6
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 8.3e-281 971.1 1041 48.2
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 1.9e-280 969.9 1036 50.2
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 7.8e-279 964.5 1006 49.6
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 1.7e-278 963.4 1081 48.2
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 1.7e-278 963.4 1087 47.5
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 3.9e-278 962.2 1058 48.5
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 5.1e-278 961.8 1073 47.7
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 1.6e-276 956.8 1050 49.1
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 2.8e-276 956.1 1067 47.4
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 1.1e-275 954.1 1057 49.5
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 5.2e-275 951.8 1007 48.8
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 5.2e-275 951.8 1083 47.8
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 5.2e-275 951.8 1026 49.6
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 6.8e-275 951.4 1028 48.3
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 1.7e-273 946.8 1007 48.7
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 4.6e-271 938.7 1017 48.2
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 5.1e-270 935.3 1086 47.0
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.5e-269 933.7 1061 48.4
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 1.1e-267 927.5 1075 48.1
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 1.4e-267 927.2 1072 49.3
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 4.0e-267 925.6 1047 48.2
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 4.0e-267 925.6 1080 47.1
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 5.2e-267 925.2 924 52.5
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 2.3e-262 909.8 973 48.7
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 2.5e-261 906.4 1044 46.5
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.5e-258 897.1 1054 47.8
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 7.4e-253 878.2 1061 46.2
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 1.6e-252 877.1 999 46.7
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 6.4e-249 865.1 899 50.3
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.2e-241 840.1 901 50.1
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 4.6e-239 832.4 1045 44.9
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 3.0e-238 829.7 1080 44.6
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 1.4e-232 810.8 823 51.2
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 5.7e-229 798.9 958 44.5
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 3.4e-226 789.6 809 52.4
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 9.1e-219 765.0 675 57.2
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 1.6e-207 727.6 1036 41.0
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 3.6e-199 699.9 783 48.8
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 8.6e-161 572.4 547 54.8
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 8.6e-161 572.4 547 54.8
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 5.8e-157 559.7 628 46.8
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 5.8e-141 506.5 538 48.5
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 2.3e-113 414.8 353 59.5
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 1.9e-67 262.3 1070 25.0
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 6.6e-60 237.3 402 38.1
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 1.1e-43 183.3 622 25.2
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 4.0e-41 174.9 399 32.6
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 4.4e-40 171.4 201 47.3
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 7.8e-37 160.6 143 57.3
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 7.3e-35 154.1 179 45.8
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 2.0e-32 146.0 171 46.8
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.9e-30 139.4 127 53.5
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 3.1e-25 122.1 171 41.5
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 4.5e-24 118.2 174 43.7
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 5.8e-16 91.3 159 33.3
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 5.8e-16 91.3 189 33.3
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.4e-14 86.7 136 39.0
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 5.7e-11 74.7 101 37.6
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 1.4e-09 70.1 68 51.5
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.8e-07 62.0 107 34.6
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 3.8e-07 62.0 70 51.4


User provided reference genes

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