Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0007s0100 Marchantia polymorpha HOM05D004094 ORTHO05D004601 0.0e+00 2917.1 1509 100.0
AagrBONN_evm.TU.Sc2ySwM_368.377 Anthoceros agrestis HOM05D004094 ORTHO05D004601 8.7e-67 260.4 835 29.1
Nn1g08759 Nelumbo nucifera HOM05D004094 ORTHO05D004601 8.7e-59 233.8 675 30.2
Pp3c13_19570 Physcomitrium patens HOM05D004094 ORTHO05D004601 2.8e-57 228.8 547 32.9
CiPaw.05G222800 Carya illinoinensis HOM05D004094 ORTHO05D004601 1.8e-56 226.1 592 30.6
Aqoxy6G00193 Aquilegia oxysepala HOM05D004094 ORTHO05D004601 1.7e-54 219.5 735 28.8
QL09p035258 Quercus lobata HOM05D004094 ORTHO05D004601 1.6e-52 213.0 1010 25.3
ATR0684G176 Amborella trichopoda HOM05D004094 ORTHO05D004601 2.7e-52 212.2 704 30.5
Hund16854 Selenicereus undatus HOM05D004094 ORTHO05D004601 8.7e-51 207.2 585 32.3
Duzib093G2002 Durio zibethinus HOM05D004094 ORTHO05D004601 1.5e-50 206.5 592 31.1
TAR625G0515 Trochodendron aralioides HOM05D004094 ORTHO05D004601 1.5e-50 206.5 588 31.3
Lj1g0022360 Lotus japonicus HOM05D004094 ORTHO05D004601 4.3e-50 204.9 569 28.8
Gohir.D06G044700 Gossypium hirsutum HOM05D004094 ORTHO05D004601 5.6e-50 204.5 567 31.0
Ca_15191_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 9.6e-50 203.8 590 27.8
Gohir.A06G043800 Gossypium hirsutum HOM05D004094 ORTHO05D004601 2.1e-49 202.6 567 31.0
Gorai.010G049800 Gossypium raimondii HOM05D004094 ORTHO05D004601 2.1e-49 202.6 578 31.8
PGR042G1714 Punica granatum HOM05D004094 ORTHO05D004601 6.2e-49 201.1 734 27.9
PSO782G4804 Papaver somniferum HOM05D004094 ORTHO05D004601 8.1e-49 200.7 595 30.4
RcHm_v2.0_Chr6g0295641 Rosa chinensis HOM05D004094 ORTHO05D004601 8.1e-49 200.7 603 29.9
Thecc.08G123800 Theobroma cacao HOM05D004094 ORTHO05D004601 8.1e-49 200.7 703 28.7
Lalb_Chr23g0271001 Lupinus albus HOM05D004094 ORTHO05D004601 1.4e-48 199.9 804 25.6
Nitab4.5_0000633g0220 Nicotiana tabacum HOM05D004094 ORTHO05D004601 1.4e-48 199.9 720 28.8
Medtr3g072400 Medicago truncatula HOM05D004094 ORTHO05D004601 1.8e-48 199.5 579 27.6
Cfa016008 Carpinus fangiana HOM05D004094 ORTHO05D004601 2.4e-48 199.1 585 29.9
Potri.005G177000 Populus trichocarpa HOM05D004094 ORTHO05D004601 3.1e-48 198.7 714 29.0
SalBow7G0426 Salvia bowleyana HOM05D004094 ORTHO05D004601 6.9e-48 197.6 577 30.0
SGA_v2.0_scaffold24G10467 Striga asiatica HOM05D004094 ORTHO05D004601 9.0e-48 197.2 596 30.5
DCAR_017419 Daucus carota HOM05D004094 ORTHO05D004601 1.2e-47 196.8 576 30.4
Cc00_g04280 Coffea canephora HOM05D004094 ORTHO05D004601 1.5e-47 196.4 607 29.7
PSO170G3655 Papaver somniferum HOM05D004094 ORTHO05D004601 2.0e-47 196.1 362 36.5
Cpa.g.sc36.56 Carica papaya HOM05D004094 ORTHO05D004601 3.4e-47 195.3 584 27.9
HPP92_002183 Vanilla planifolia HOM05D004094 ORTHO05D004601 3.4e-47 195.3 771 26.5
CsaV3_4G028330 Cucumis sativus L. HOM05D004094 ORTHO05D004601 4.5e-47 194.9 590 29.3
Duzib041G0387 Durio zibethinus HOM05D004094 ORTHO05D004601 7.6e-47 194.1 570 31.1
FAN20G0223 Fragaria x ananassa HOM05D004094 ORTHO05D004601 1.3e-46 193.4 560 30.4
FAN24G0267 Fragaria x ananassa HOM05D004094 ORTHO05D004601 1.3e-46 193.4 552 30.1
Psat5g131960 Pisum sativum HOM05D004094 ORTHO05D004601 1.3e-46 193.4 569 29.5
Potri.002G084700 Populus trichocarpa HOM05D004094 ORTHO05D004601 1.7e-46 193.0 591 30.6
CANSAT64G2400 Cannabis sativa HOM05D004094 ORTHO05D004601 2.9e-46 192.2 598 30.1
Lalb_Chr04g0253401 Lupinus albus HOM05D004094 ORTHO05D004601 6.5e-46 191.0 587 28.3
Nitab4.5_0004044g0030 Nicotiana tabacum HOM05D004094 ORTHO05D004601 8.4e-46 190.7 584 30.0
Pp3c12_8350 Physcomitrium patens HOM05D004094 ORTHO05D004601 8.4e-46 190.7 493 31.8
Sabra05G0133600 Salix brachista HOM05D004094 ORTHO05D004601 1.1e-45 190.3 511 30.7
TPR.G25784 Trifolium pratense HOM05D004094 ORTHO05D004601 1.1e-45 190.3 579 28.8
FAN15G0810 Fragaria x ananassa HOM05D004094 ORTHO05D004601 1.4e-45 189.9 557 30.0
GSVIVG01008880001 Vitis vinifera HOM05D004094 ORTHO05D004601 1.4e-45 189.9 542 30.1
FvH4_2g26770 Fragaria vesca HOM05D004094 ORTHO05D004601 1.9e-45 189.5 571 29.1
TWI12G0492 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 1.9e-45 189.5 606 29.4
Migut.C01138 Erythranthe guttata HOM05D004094 ORTHO05D004601 2.5e-45 189.1 801 27.5
Sopen06g020480 Solanum pennellii HOM05D004094 ORTHO05D004601 3.2e-45 188.7 726 27.8
AL2G37830 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 4.2e-45 188.3 601 27.8
HanXRQChr10g0304931 Helianthus annuus HOM05D004094 ORTHO05D004601 4.2e-45 188.3 752 26.7
Ca_12613_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 7.1e-45 187.6 593 28.7
MSTRG.1451 Avicennia marina HOM05D004094 ORTHO05D004601 9.3e-45 187.2 867 25.7
Glyma.06G112600 Glycine max HOM05D004094 ORTHO05D004601 1.6e-44 186.4 587 29.1
Medtr1g030410 Medicago truncatula HOM05D004094 ORTHO05D004601 1.6e-44 186.4 580 28.6
Sabra02G0066100 Salix brachista HOM05D004094 ORTHO05D004601 2.7e-44 185.7 594 30.6
Manes.02G162400 Manihot esculenta HOM05D004094 ORTHO05D004601 4.6e-44 184.9 595 29.9
TPR.G24027 Trifolium pratense HOM05D004094 ORTHO05D004601 4.6e-44 184.9 587 27.9
Sp5g32780 Schrenkiella parvula HOM05D004094 ORTHO05D004601 6.0e-44 184.5 594 27.8
BolC6t40183H Brassica oleracea HOM05D004094 ORTHO05D004601 1.3e-43 183.3 589 28.2
CSS0004297 Camellia sinensis var. sinensis HOM05D004094 ORTHO05D004601 1.8e-43 183.0 736 28.0
Prupe.1G499900 Prunus persica HOM05D004094 ORTHO05D004601 1.8e-43 183.0 579 30.2
AT1G77620 Arabidopsis thaliana HOM05D004094 ORTHO05D004601 2.3e-43 182.6 604 28.6
C06p51630 Brassica napus HOM05D004094 ORTHO05D004601 2.3e-43 182.6 588 27.9
DCAR_014092 Daucus carota HOM05D004094 ORTHO05D004601 2.3e-43 182.6 579 29.9
BcaC08g47600 Brassica carinata HOM05D004094 ORTHO05D004601 3.0e-43 182.2 588 27.9
Glyma.04G250200 Glycine max HOM05D004094 ORTHO05D004601 3.9e-43 181.8 580 29.0
Psat6g041960 Pisum sativum HOM05D004094 ORTHO05D004601 6.7e-43 181.0 591 29.4
COL.COLO4_35941 Corchorus olitorius HOM05D004094 ORTHO05D004601 8.7e-43 180.6 368 35.1
arahy.Tifrunner.gnm1.ann1.WV2Q7U Arachis hypogaea HOM05D004094 ORTHO05D004601 2.5e-42 179.1 624 27.7
Ca_14821_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 3.3e-42 178.7 359 33.4
Sed0014690 Sechium edule HOM05D004094 ORTHO05D004601 3.3e-42 178.7 590 28.8
Phvul.009G124500 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 4.3e-42 178.3 602 27.1
Lj1g0018898 Lotus japonicus HOM05D004094 ORTHO05D004601 5.7e-42 177.9 576 28.8
Lsat_1_v5_gn_5_126560 Lactuca sativa HOM05D004094 ORTHO05D004601 7.4e-42 177.6 348 36.5
Peaxi162Scf00051g00911 Petunia axillaris HOM05D004094 ORTHO05D004601 1.3e-41 176.8 362 35.9
unitig_26.g9911 Utricularia gibba HOM05D004094 ORTHO05D004601 2.1e-41 176.0 373 33.0
Zm00001eb398150 Zea mays HOM05D004094 ORTHO05D004601 2.1e-41 176.0 503 29.4
ClCG11G015680 Citrullus lanatus HOM05D004094 ORTHO05D004601 2.8e-41 175.6 578 27.9
Hma1.2p1_0186F.1_g081720 Hydrangea macrophylla HOM05D004094 ORTHO05D004601 2.8e-41 175.6 345 36.5
arahy.Tifrunner.gnm1.ann1.1LZC07 Arachis hypogaea HOM05D004094 ORTHO05D004601 3.7e-41 175.3 598 28.4
ECA234G0673 Erigeron canadensis HOM05D004094 ORTHO05D004601 3.7e-41 175.3 595 28.9
Solyc06g060350.4 Solanum lycopersicum HOM05D004094 ORTHO05D004601 4.8e-41 174.9 404 33.2
AL142U10030 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 6.3e-41 174.5 468 30.3
AUR62027887 Chenopodium quinoa HOM05D004094 ORTHO05D004601 6.3e-41 174.5 744 26.5
EL10Ac1g01050 Beta vulgaris HOM05D004094 ORTHO05D004601 1.8e-40 172.9 617 29.7
Rhsim06G0104600 Rhododendron simsii HOM05D004094 ORTHO05D004601 2.4e-40 172.6 352 35.2
BraA07t31822Z Brassica rapa HOM05D004094 ORTHO05D004601 3.1e-40 172.2 377 32.9
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 3.1e-40 172.2 608 26.5
Psat1g217360 Pisum sativum HOM05D004094 ORTHO05D004601 3.1e-40 172.2 364 33.0
Sc23g0000720 Simmondsia chinensis HOM05D004094 ORTHO05D004601 4.1e-40 171.8 601 27.6
Ciclev10000067m.g Citrus clementina HOM05D004094 ORTHO05D004601 5.3e-40 171.4 354 33.9
Sed0015071 Sechium edule HOM05D004094 ORTHO05D004601 5.3e-40 171.4 583 28.3
BcaB05g25063 Brassica carinata HOM05D004094 ORTHO05D004601 9.0e-40 170.6 350 33.7
AUR62019047 Chenopodium quinoa HOM05D004094 ORTHO05D004601 9.0e-40 170.6 744 25.9
Actinidia02613 Actinidia chinensis HOM05D004094 ORTHO05D004601 1.2e-39 170.2 396 32.3
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 3.4e-39 168.7 353 33.1
Sc01g0001180 Simmondsia chinensis HOM05D004094 ORTHO05D004601 4.5e-39 168.3 609 29.1
Os03g0262300 Oryza sativa ssp. japonica HOM05D004094 ORTHO05D004601 5.9e-39 167.9 719 25.7
BcaC03g15753 Brassica carinata HOM05D004094 ORTHO05D004601 7.6e-39 167.5 456 30.7
MELO3C010472.2 Cucumis melo HOM05D004094 ORTHO05D004601 6.5e-38 164.5 618 27.0
Dinv07237 Davidia involucrata HOM05D004094 ORTHO05D004601 1.4e-37 163.3 593 28.5
THA.LOC104800189 Tarenaya hassleriana HOM05D004094 ORTHO05D004601 1.4e-37 163.3 733 26.1
VMungo1309G1727 Vigna mungo HOM05D004094 ORTHO05D004601 1.4e-37 163.3 358 30.7
Thhalv10018028m.g Eutrema salsugineum HOM05D004094 ORTHO05D004601 2.5e-37 162.5 603 26.7
vmacro12538 Vaccinium macrocarpon HOM05D004094 ORTHO05D004601 4.2e-37 161.8 366 33.1
CARHR071130 Cardamine hirsuta HOM05D004094 ORTHO05D004601 5.5e-37 161.4 369 31.4
arahy.Tifrunner.gnm1.ann1.3295S8 Arachis hypogaea HOM05D004094 ORTHO05D004601 7.2e-37 161.0 625 26.4
MD15G1351000 Malus domestica HOM05D004094 ORTHO05D004601 7.9e-36 157.5 587 27.4
arahy.Tifrunner.gnm1.ann1.HK9WB5 Arachis hypogaea HOM05D004094 ORTHO05D004601 1.0e-35 157.1 626 25.7
VMungo0647G1825 Vigna mungo HOM05D004094 ORTHO05D004601 3.0e-35 155.6 345 30.7
Phvul.008G163600 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 3.9e-35 155.2 350 31.7
Haze_00454 Corylus avellana HOM05D004094 ORTHO05D004601 8.7e-35 154.1 1106 23.3
Glyma.14G148700 Glycine max HOM05D004094 ORTHO05D004601 3.7e-33 148.7 573 26.0
CBR_g29736 Chara braunii HOM05D004094 ORTHO05D004601 5.3e-32 144.8 561 27.3
Aa31LG4G7730 Aethionema arabicum HOM05D004094 ORTHO05D004601 1.2e-31 143.7 817 23.5
CDE06G1261 Ceratophyllum demersum HOM05D004094 ORTHO05D004601 9.4e-29 134.0 282 36.2
SHI23046 Sapria himalayana HOM05D004094 ORTHO05D004601 2.5e-26 125.9 306 34.0
Psat3g082880 Pisum sativum HOM05D004094 ORTHO05D004601 5.9e-23 114.8 372 30.1
Cfa023858 Carpinus fangiana HOM05D004094 ORTHO05D004601 1.2e-20 107.1 468 27.6
FAN20G1705 Fragaria x ananassa HOM05D004094 ORTHO05D004601 4.7e-20 105.1 130 41.5
C02p34910 Brassica napus HOM05D004094 ORTHO05D004601 3.9e-19 102.1 352 27.0
Oeu047946.1 Olea europaea HOM05D004094 ORTHO05D004601 2.8e-17 95.9 130 44.6
SEGI_20546 Sequoiadendron giganteum HOM05D004094 ORTHO05D004601 1.6e-15 90.1 342 29.5
BolC2t09507H Brassica oleracea HOM05D004094 ORTHO05D004601 3.5e-15 89.0 202 34.7
Lj7A339T40 Lonicera japonica HOM05D004094 ORTHO05D004601 2.9e-14 85.9 115 43.5
MCO09G770 Micromonas commoda HOM05D004094 ORTHO05D004601 3.2e-13 82.4 383 27.7
MBI03_g47843_MAGBIO Magnolia biondii HOM05D004094 ORTHO05D004601 1.6e-12 80.1 325 24.9
BraA02t07168Z Brassica rapa HOM05D004094 ORTHO05D004601 8.0e-12 77.8 130 38.5
Actinidia23072 Actinidia chinensis HOM05D004094 ORTHO05D004601 2.3e-11 76.3 120 42.5
Cre07.g347550 Chlamydomonas reinhardtii HOM05D004094 ORTHO05D004601 1.7e-06 60.1 161 27.3
MBI03_g47842_MAGBIO Magnolia biondii HOM05D004094 ORTHO05D004601 5.0e-06 58.5 50 60.0


User provided reference genes

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