Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0007s0070 Marchantia polymorpha HOM05D007782 ORTHO05D009833 2.9e-31 137.9 68 100.0
DCAR_027723 Daucus carota HOM05D007782 ORTHO05D009833 1.6e-08 62.4 60 48.3
Carub.0007s1735 Capsella rubella HOM05D007782 ORTHO05D009833 2.0e-08 62.0 58 51.7
Aa31LG6G7000 Aethionema arabicum HOM05D007782 ORTHO05D009833 1.0e-07 59.7 63 42.9
QL02p031553 Quercus lobata HOM05D007782 ORTHO05D009833 1.3e-07 59.3 58 48.3
Thecc.03G292200 Theobroma cacao HOM05D007782 ORTHO05D009833 2.3e-07 58.5 53 45.3
AT4G23760 Arabidopsis thaliana HOM05D007782 ORTHO05D009833 5.0e-07 57.4 58 48.3
Eucgr.E00835 Eucalyptus grandis HOM05D007782 ORTHO05D009833 5.0e-07 57.4 56 46.4
Sp6g06300 Schrenkiella parvula HOM05D007782 ORTHO05D009833 5.0e-07 57.4 56 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1714 Anthoceros agrestis HOM05D007782 ORTHO05D009833 6.6e-07 57.0 51 43.1
Potri.003G136500 Populus trichocarpa HOM05D007782 ORTHO05D009833 6.6e-07 57.0 55 49.1
CARHR231160 Cardamine hirsuta HOM05D007782 ORTHO05D009833 8.6e-07 56.6 61 42.6
FAN04G1669 Fragaria x ananassa HOM05D007782 ORTHO05D009833 8.6e-07 56.6 55 41.8
Glyma.08G021000 Glycine max HOM05D007782 ORTHO05D009833 8.6e-07 56.6 58 48.3
unitig_61.g26273 Utricularia gibba HOM05D007782 ORTHO05D009833 8.6e-07 56.6 49 46.9
Atru.chr9.2057 Acer truncatum HOM05D007782 ORTHO05D009833 1.1e-06 56.2 60 45.0
ATR1093G039 Amborella trichopoda HOM05D007782 ORTHO05D009833 1.1e-06 56.2 48 50.0
BcaNung05927 Brassica carinata HOM05D007782 ORTHO05D009833 1.1e-06 56.2 56 48.2
Thhalv10026535m.g Eutrema salsugineum HOM05D007782 ORTHO05D009833 1.1e-06 56.2 58 46.6
MD06G1100800 Malus domestica HOM05D007782 ORTHO05D009833 1.1e-06 56.2 55 45.5
Manes.01G046100 Manihot esculenta HOM05D007782 ORTHO05D009833 1.1e-06 56.2 54 48.1
Os01g0224300 Oryza sativa ssp. japonica HOM05D007782 ORTHO05D009833 1.1e-06 56.2 58 41.4
Migut.E01229 Erythranthe guttata HOM05D007782 ORTHO05D009833 1.5e-06 55.8 55 40.0
Phvul.002G295900 Phaseolus vulgaris HOM05D007782 ORTHO05D009833 1.5e-06 55.8 51 45.1
AL6G45280 Arabidopsis lyrata HOM05D007782 ORTHO05D009833 1.9e-06 55.5 58 46.6
Cfa012852 Carpinus fangiana HOM05D007782 ORTHO05D009833 1.9e-06 55.5 53 43.4
Haze_08681 Corylus avellana HOM05D007782 ORTHO05D009833 1.9e-06 55.5 53 43.4
Nn1g01795 Nelumbo nucifera HOM05D007782 ORTHO05D009833 1.9e-06 55.5 55 49.1
Sabra03G0098200 Salix brachista HOM05D007782 ORTHO05D009833 1.9e-06 55.5 55 47.3
Sp7g21730 Schrenkiella parvula HOM05D007782 ORTHO05D009833 1.9e-06 55.5 56 44.6
vmacro11447 Vaccinium macrocarpon HOM05D007782 ORTHO05D009833 1.9e-06 55.5 63 41.3
Lsat_1_v5_gn_6_11880 Lactuca sativa HOM05D007782 ORTHO05D009833 2.5e-06 55.1 48 47.9
Lj4g0009467 Lotus japonicus HOM05D007782 ORTHO05D009833 2.5e-06 55.1 53 43.4
RcHm_v2.0_Chr7g0195561 Rosa chinensis HOM05D007782 ORTHO05D009833 2.5e-06 55.1 55 40.0
Hund14240 Selenicereus undatus HOM05D007782 ORTHO05D009833 2.5e-06 55.1 61 39.3
C07p53110 Brassica napus HOM05D007782 ORTHO05D009833 3.3e-06 54.7 56 46.4
BolC7t45807H Brassica oleracea HOM05D007782 ORTHO05D009833 3.3e-06 54.7 56 46.4
A03p54750 Brassica napus HOM05D007782 ORTHO05D009833 4.2e-06 54.3 58 44.8
BraA03t14542Z Brassica rapa HOM05D007782 ORTHO05D009833 4.2e-06 54.3 58 44.8
Cc08_g15700 Coffea canephora HOM05D007782 ORTHO05D009833 4.2e-06 54.3 52 48.1
Dinv37557 Davidia involucrata HOM05D007782 ORTHO05D009833 4.2e-06 54.3 50 46.0
Thhalv10029109m.g Eutrema salsugineum HOM05D007782 ORTHO05D009833 4.2e-06 54.3 48 45.8
FAN08G0568 Fragaria x ananassa HOM05D007782 ORTHO05D009833 4.2e-06 54.3 55 40.0
Prupe.5G114300 Prunus persica HOM05D007782 ORTHO05D009833 4.2e-06 54.3 55 41.8
SalBow8G2543 Salvia bowleyana HOM05D007782 ORTHO05D009833 4.2e-06 54.3 51 43.1
CARHR255470 Cardamine hirsuta HOM05D007782 ORTHO05D009833 5.5e-06 53.9 55 41.8
CiPaw.12G085400 Carya illinoinensis HOM05D007782 ORTHO05D009833 5.5e-06 53.9 54 40.7
Ca_17498_v3 Cicer arietinum L. HOM05D007782 ORTHO05D009833 5.5e-06 53.9 54 40.7
HanXRQChr07g0191091 Helianthus annuus HOM05D007782 ORTHO05D009833 5.5e-06 53.9 55 45.5
GSVIVG01019488001 Vitis vinifera HOM05D007782 ORTHO05D009833 5.5e-06 53.9 67 41.8
AL7G29590 Arabidopsis lyrata HOM05D007782 ORTHO05D009833 7.2e-06 53.5 58 39.7
Solyc12g056090.2 Solanum lycopersicum HOM05D007782 ORTHO05D009833 7.2e-06 53.5 49 46.9
Sopen12g028600 Solanum pennellii HOM05D007782 ORTHO05D009833 7.2e-06 53.5 49 46.9
PGSC0003DMG400004987 Solanum tuberosum HOM05D007782 ORTHO05D009833 7.2e-06 53.5 49 46.9


User provided reference genes

Program Settings