Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 0.0e+00 1075.1 528 100.0
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 4.0e-128 462.6 538 43.7
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 6.9e-128 461.8 534 43.8
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.2e-127 461.1 582 44.3
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 1.2e-127 461.1 476 46.8
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 2.0e-127 460.3 474 46.6
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 5.8e-127 458.8 521 44.5
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 2.2e-126 456.8 471 47.1
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.1e-125 454.5 470 48.5
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 1.9e-125 453.8 471 47.6
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.6e-124 450.7 469 46.5
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 4.6e-124 449.1 483 45.8
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 7.8e-124 448.4 471 46.7
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 3.9e-123 446.0 469 46.5
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 1.1e-122 444.5 468 46.4
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.1e-122 444.5 468 47.4
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.5e-122 444.1 468 47.9
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.9e-122 443.7 469 45.2
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.5e-122 443.4 473 46.5
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 3.3e-122 443.0 466 46.8
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 4.3e-122 442.6 522 44.1
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 7.3e-122 441.8 468 46.4
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 7.3e-122 441.8 468 46.6
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.3e-121 441.0 519 43.5
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 3.6e-121 439.5 468 46.2
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.8e-121 439.1 468 47.2
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.8e-121 439.1 468 47.2
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.8e-121 439.1 519 42.2
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 6.2e-121 438.7 472 45.8
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 6.2e-121 438.7 472 45.8
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 8.1e-121 438.3 468 47.2
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 8.1e-121 438.3 468 47.2
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 8.1e-121 438.3 521 43.6
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 1.1e-120 438.0 507 44.0
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 1.1e-120 438.0 468 45.9
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 1.4e-120 437.6 472 45.3
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 1.8e-120 437.2 471 46.1
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 2.4e-120 436.8 516 42.4
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 2.4e-120 436.8 470 47.0
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.0e-120 436.0 468 45.7
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 5.3e-120 435.6 469 46.5
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.5e-119 434.1 473 46.1
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 1.5e-119 434.1 479 45.7
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.5e-119 434.1 467 46.5
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.5e-119 434.1 523 43.0
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 7.6e-119 431.8 468 45.7
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 9.9e-119 431.4 521 42.4
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.3e-118 431.0 469 45.6
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 2.2e-118 430.3 469 45.2
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 4.9e-118 429.1 496 43.5
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 6.4e-118 428.7 515 43.3
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.1e-117 427.9 496 43.3
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 1.9e-117 427.2 479 45.5
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 2.4e-117 426.8 515 44.1
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 3.2e-117 426.4 521 44.0
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 9.3e-117 424.9 525 43.8
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 1.2e-116 424.5 529 42.5
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 1.2e-116 424.5 512 43.0
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 2.1e-116 423.7 526 41.1
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.5e-116 422.9 469 44.6
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 4.6e-116 422.5 457 46.8
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 6.0e-116 422.2 472 45.8
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 6.0e-116 422.2 481 45.5
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 7.9e-116 421.8 474 44.5
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 1.0e-115 421.4 469 44.3
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.8e-115 420.6 527 42.3
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 2.3e-115 420.2 470 44.3
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 2.3e-115 420.2 520 42.5
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 3.0e-115 419.9 472 45.6
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 3.0e-115 419.9 468 45.1
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 3.9e-115 419.5 470 43.6
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 3.9e-115 419.5 530 41.7
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 3.9e-115 419.5 526 40.7
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.9e-115 419.5 468 45.3
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 5.1e-115 419.1 538 43.1
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 6.7e-115 418.7 526 40.9
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 6.7e-115 418.7 475 44.8
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 8.7e-115 418.3 518 41.5
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 1.1e-114 417.9 474 44.9
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.5e-114 417.5 530 41.7
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.5e-114 417.5 535 40.7
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 2.5e-114 416.8 495 43.0
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 3.3e-114 416.4 535 41.5
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 5.6e-114 415.6 526 40.3
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.3e-113 414.5 529 40.5
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 1.6e-113 414.1 477 43.6
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.6e-113 414.1 478 43.7
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 1.6e-113 414.1 522 41.2
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 3.7e-113 412.9 534 41.4
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 6.2e-113 412.1 468 44.7
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 6.2e-113 412.1 468 44.7
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.1e-112 411.4 519 40.5
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.1e-112 411.4 524 42.0
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.4e-112 411.0 543 40.1
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 4.0e-112 409.5 547 39.3
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 9.0e-112 408.3 468 42.7
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 2.0e-111 407.1 537 41.2
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 7.6e-111 405.2 544 40.1
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 9.9e-111 404.8 470 44.5
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.3e-110 404.4 472 43.0
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.3e-110 404.4 495 43.0
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 8.4e-110 401.7 482 41.9
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.1e-109 401.4 528 41.3
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.5e-109 400.2 534 41.8
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 9.3e-109 398.3 478 41.8
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 1.1e-106 391.3 403 47.9
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 1.1e-104 384.8 414 45.2
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 3.1e-104 383.3 468 42.1
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 4.0e-104 382.9 456 44.1
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 6.9e-104 382.1 468 42.9
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 1.6e-100 370.9 470 40.6
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 2.5e-98 363.6 475 40.6
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.6e-97 360.9 448 44.4
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.0e-95 354.0 393 43.8
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 1.6e-92 344.4 457 40.0
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 2.2e-86 323.9 382 41.6
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 3.2e-85 320.1 308 48.7
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 6.1e-84 315.8 323 46.4
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 8.8e-83 312.0 322 46.3
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 3.1e-80 303.5 301 47.8
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 3.8e-78 296.6 304 46.7
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.5e-74 284.6 393 39.9
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 3.3e-74 283.5 314 42.7
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 4.8e-57 226.5 214 48.6
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 7.7e-55 219.2 257 42.4
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 3.8e-54 216.9 248 42.7
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 3.3e-53 213.8 250 41.2
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 4.2e-53 213.4 215 47.9
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.8e-51 208.0 189 53.4
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 2.2e-49 201.1 208 45.2
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 2.3e-46 191.0 394 32.2
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.1e-45 188.7 206 43.2
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-43 181.8 431 27.8
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 9.8e-42 175.6 210 40.5
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 1.2e-39 168.7 272 37.1
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 2.3e-35 154.5 234 40.6
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 2.0e-34 151.4 234 40.6
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 1.7e-33 148.3 149 47.0
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 4.1e-32 143.7 118 50.0
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 6.0e-31 139.8 119 47.9
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 6.0e-31 139.8 119 47.9
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 4.0e-27 127.1 171 40.9
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 6.8e-27 126.3 172 40.1
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 1.2e-26 125.6 217 35.9
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.4e-24 117.9 158 40.5
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 9.2e-24 115.9 171 39.2
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 8.6e-22 109.4 100 42.0
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 5.6e-21 106.7 156 39.1
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 8.1e-20 102.8 103 43.7
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 4.0e-19 100.5 165 37.0
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 4.0e-19 100.5 177 35.0
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 5.2e-19 100.1 268 30.2
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 2.6e-18 97.8 76 44.7
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 2.6e-18 97.8 76 44.7
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.9e-16 91.7 97 47.4
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 4.2e-16 90.5 92 45.7
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 9.3e-16 89.4 79 43.0
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 1.6e-15 88.6 113 40.7
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 3.0e-14 84.3 115 45.2
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 3.6e-12 77.4 215 28.4
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 7.1e-08 63.2 89 37.1
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 4.6e-07 60.5 71 38.0
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 3.0e-06 57.8 59 40.7


User provided reference genes

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