Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 4.4e-256 887.5 456 100.0
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 1.1e-198 696.8 463 78.0
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.1e-193 680.2 429 81.4
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 2.1e-178 629.4 415 76.1
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 5.3e-177 624.8 401 77.8
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 3.8e-175 618.6 380 81.1
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 3.8e-175 618.6 380 82.1
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 3.8e-175 618.6 409 77.8
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 4.9e-175 618.2 427 73.1
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 6.5e-175 617.8 421 74.6
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 8.4e-175 617.5 380 81.6
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 8.4e-175 617.5 380 81.6
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 8.4e-175 617.5 380 81.6
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 2.5e-174 615.9 380 81.3
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 3.2e-174 615.5 380 81.1
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 3.2e-174 615.5 418 75.8
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 4.2e-174 615.1 380 80.0
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 5.5e-174 614.8 380 80.0
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 1.2e-173 613.6 385 78.7
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 1.2e-173 613.6 385 78.7
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 1.2e-173 613.6 390 79.0
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 2.1e-173 612.8 377 80.9
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 2.7e-173 612.5 385 78.7
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 3.5e-173 612.1 435 71.5
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 3.5e-173 612.1 382 80.1
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 4.6e-173 611.7 380 79.7
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 6.0e-173 611.3 380 80.8
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 1.3e-172 610.1 386 78.8
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 1.3e-172 610.1 384 79.7
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 2.3e-172 609.4 380 80.5
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 2.3e-172 609.4 380 79.5
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 3.0e-172 609.0 382 79.8
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 3.0e-172 609.0 430 72.6
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 3.0e-172 609.0 430 72.6
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 3.0e-172 609.0 380 80.0
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 3.9e-172 608.6 385 78.7
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 3.9e-172 608.6 425 74.1
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 5.1e-172 608.2 380 80.3
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 6.7e-172 607.8 380 80.3
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 6.7e-172 607.8 424 73.8
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 8.7e-172 607.4 382 79.1
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 8.7e-172 607.4 400 76.5
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 8.7e-172 607.4 381 79.3
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 8.7e-172 607.4 385 78.7
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 1.1e-171 607.1 380 79.5
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 1.1e-171 607.1 385 78.7
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 1.1e-171 607.1 386 78.2
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 1.5e-171 606.7 381 78.7
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 1.9e-171 606.3 381 79.0
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 1.9e-171 606.3 416 73.8
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 3.3e-171 605.5 382 79.3
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 4.3e-171 605.1 380 80.8
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 4.3e-171 605.1 380 80.0
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 5.7e-171 604.7 384 78.6
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.3e-170 603.6 380 79.5
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.3e-170 603.6 380 78.9
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 1.3e-170 603.6 402 76.4
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 2.1e-170 602.8 397 77.1
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 2.8e-170 602.4 393 77.6
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 3.7e-170 602.1 380 77.4
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 8.2e-170 600.9 380 78.7
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 8.2e-170 600.9 381 78.5
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 1.8e-169 599.7 380 77.6
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 2.4e-169 599.4 380 78.4
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 2.4e-169 599.4 408 76.0
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 5.3e-169 598.2 412 73.8
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 5.3e-169 598.2 412 73.8
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 9.0e-169 597.4 380 78.4
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 9.0e-169 597.4 412 73.5
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 9.0e-169 597.4 412 73.5
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 9.0e-169 597.4 412 73.5
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 1.2e-168 597.0 419 72.8
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.5e-168 596.7 414 73.4
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 2.0e-168 596.3 406 74.1
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 2.0e-168 596.3 449 69.7
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.0e-168 596.3 399 74.2
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 2.6e-168 595.9 406 74.4
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 4.5e-168 595.1 419 72.6
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.9e-168 594.7 385 77.4
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.9e-168 594.7 380 77.1
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 5.9e-168 594.7 387 77.8
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 5.9e-168 594.7 380 79.5
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 7.6e-168 594.3 419 72.6
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 7.6e-168 594.3 405 75.6
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 7.6e-168 594.3 405 75.6
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 1.0e-167 594.0 380 77.9
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 1.0e-167 594.0 425 71.5
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 1.3e-167 593.6 385 76.4
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.3e-167 593.6 371 78.4
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 1.3e-167 593.6 380 77.1
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 1.7e-167 593.2 419 72.3
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 2.2e-167 592.8 406 74.1
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 2.9e-167 592.4 392 76.3
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 2.9e-167 592.4 406 74.1
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 2.9e-167 592.4 393 75.6
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 3.8e-167 592.0 419 72.1
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 5.0e-167 591.7 421 72.0
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 6.5e-167 591.3 380 77.1
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 6.5e-167 591.3 381 77.7
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.5e-167 591.3 380 76.1
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 6.5e-167 591.3 380 76.1
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 8.5e-167 590.9 381 76.4
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 8.5e-167 590.9 381 77.4
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 8.5e-167 590.9 380 76.6
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 1.1e-166 590.5 404 76.0
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 4.2e-166 588.6 382 76.4
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.2e-166 588.6 385 76.6
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 2.1e-165 586.3 413 70.9
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 2.1e-165 586.3 380 77.6
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 2.1e-165 586.3 413 72.4
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 2.7e-165 585.9 378 77.0
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 7.9e-165 584.3 384 77.1
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 7.9e-165 584.3 383 76.8
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 1.8e-164 583.2 406 72.9
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 1.8e-164 583.2 382 75.9
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 3.0e-164 582.4 399 73.2
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 3.9e-164 582.0 431 70.1
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 2.5e-163 579.3 406 72.7
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 3.3e-163 578.9 397 73.6
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 5.7e-163 578.2 383 73.9
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.3e-162 574.7 380 74.2
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 9.1e-161 570.9 493 62.5
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.5e-160 570.1 420 70.5
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 3.8e-159 565.5 392 71.9
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 1.1e-158 563.9 389 71.7
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 1.4e-158 563.5 517 59.4
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 4.2e-158 562.0 395 71.9
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 1.6e-157 560.1 397 70.0
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.6e-157 558.9 381 74.5
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 7.9e-157 557.8 401 70.1
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 2.6e-155 552.7 378 73.5
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 5.9e-152 541.6 350 76.9
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.2e-151 539.7 376 71.8
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 2.7e-149 532.7 389 70.2
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 8.8e-148 527.7 375 72.0
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 7.4e-147 524.6 382 70.4
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 3.7e-146 522.3 318 80.5
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 2.0e-144 516.5 336 76.8
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 2.6e-144 516.2 340 77.9
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.3e-143 513.8 334 79.0
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 6.5e-143 511.5 333 77.8
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 8.8e-140 501.1 366 70.2
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 1.6e-136 490.3 333 76.6
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 3.5e-136 489.2 388 66.5
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 1.3e-135 487.3 346 67.9
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 7.5e-131 471.5 428 59.3
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 4.1e-129 465.7 315 76.8
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 5.5e-126 455.3 341 69.5
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 3.1e-121 439.5 324 68.5
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 2.7e-120 436.4 262 81.3
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 7.8e-120 434.9 404 58.9
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 6.2e-101 372.1 254 73.6
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 9.2e-89 331.6 227 75.3
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 1.2e-85 321.2 365 47.1
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.4e-82 308.9 201 71.6
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 4.2e-81 306.2 355 50.4
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 3.3e-78 296.6 186 74.7
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 2.0e-75 287.3 178 82.6
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.7e-71 272.3 178 77.0
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 7.6e-67 258.8 162 77.2
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 3.8e-58 229.9 187 61.5
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 3.8e-58 229.9 187 61.5
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 2.7e-56 223.8 221 58.8
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 5.7e-54 216.1 146 75.3
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.6e-48 198.0 244 51.6
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 8.8e-39 165.6 99 81.8
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 3.1e-36 157.1 220 50.9
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 5.9e-35 152.9 100 72.0
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 3.0e-23 114.0 82 70.7
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 2.0e-22 111.3 60 90.0
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 1.0e-18 99.0 63 79.4
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 1.0e-18 99.0 63 79.4
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.7e-18 98.2 292 32.2
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 2.2e-18 97.8 97 56.7
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 2.7e-16 90.9 73 65.8
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.6e-16 90.5 90 53.3
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 1.3e-13 82.0 45 82.2
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 8.3e-13 79.3 49 79.6
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 5.9e-11 73.2 47 76.6
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 2.9e-10 70.9 42 83.3
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 4.4e-06 57.0 28 78.6


User provided reference genes

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