Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 2.6e-106 388.7 189 100.0
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 6.8e-86 320.9 190 79.5
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 2.7e-82 308.9 190 76.8
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 2.0e-74 282.7 189 69.3
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 1.3e-73 280.0 191 70.2
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 1.6e-71 273.1 189 68.8
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 1.0e-70 270.4 189 68.3
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 1.8e-70 269.6 189 68.3
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 2.3e-70 269.2 189 67.7
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 3.1e-70 268.9 190 67.9
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 4.0e-70 268.5 189 67.7
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 6.8e-70 267.7 189 67.7
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 6.8e-70 267.7 187 65.2
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 2.0e-69 266.2 189 67.2
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 2.0e-69 266.2 189 68.3
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 3.4e-69 265.4 189 68.3
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 4.4e-69 265.0 189 67.2
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 9.8e-69 263.8 189 67.2
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 9.8e-69 263.8 189 68.3
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 2.9e-68 262.3 189 64.6
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 2.9e-68 262.3 189 67.7
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 3.7e-68 261.9 189 67.2
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 3.7e-68 261.9 189 65.1
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 6.4e-68 261.2 189 67.2
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 8.3e-68 260.8 191 66.5
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 1.4e-67 260.0 192 66.1
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 1.4e-67 260.0 192 66.1
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 1.9e-67 259.6 189 66.1
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 2.4e-67 259.2 190 66.3
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 2.4e-67 259.2 189 65.1
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 2.4e-67 259.2 189 66.1
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 3.2e-67 258.8 189 65.6
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 3.2e-67 258.8 188 66.0
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 4.1e-67 258.5 189 66.7
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 4.1e-67 258.5 189 65.6
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 5.4e-67 258.1 189 66.1
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 5.4e-67 258.1 189 65.1
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 7.0e-67 257.7 189 66.1
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 7.0e-67 257.7 189 66.7
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 7.0e-67 257.7 188 66.5
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 7.0e-67 257.7 192 64.1
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 9.2e-67 257.3 189 65.1
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 9.2e-67 257.3 189 66.1
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 9.2e-67 257.3 192 64.6
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 9.2e-67 257.3 190 67.4
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 1.2e-66 256.9 189 65.6
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 1.6e-66 256.5 192 65.6
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 1.6e-66 256.5 191 66.0
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 2.0e-66 256.1 188 64.4
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 2.0e-66 256.1 188 63.8
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 2.0e-66 256.1 189 64.6
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 2.7e-66 255.8 189 66.1
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 2.7e-66 255.8 193 64.2
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 3.5e-66 255.4 189 65.6
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 3.5e-66 255.4 189 66.1
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 4.6e-66 255.0 191 65.4
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 4.6e-66 255.0 191 64.4
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 4.6e-66 255.0 189 65.1
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 4.6e-66 255.0 192 62.5
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 6.0e-66 254.6 192 65.6
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 1.0e-65 253.8 191 63.9
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 1.0e-65 253.8 191 63.9
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 1.0e-65 253.8 192 65.6
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 1.3e-65 253.4 191 63.9
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 1.3e-65 253.4 192 67.2
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 1.3e-65 253.4 189 63.0
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 1.7e-65 253.1 190 63.2
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 1.7e-65 253.1 191 63.4
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 1.7e-65 253.1 189 65.1
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 1.7e-65 253.1 189 62.4
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 2.3e-65 252.7 191 64.9
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 2.3e-65 252.7 191 64.4
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 2.3e-65 252.7 192 65.1
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 2.3e-65 252.7 189 64.0
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 3.0e-65 252.3 191 64.9
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 3.0e-65 252.3 191 64.4
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 3.0e-65 252.3 189 63.5
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 3.9e-65 251.9 189 64.0
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 5.0e-65 251.5 191 64.4
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 5.0e-65 251.5 191 64.4
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 5.0e-65 251.5 193 62.7
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 5.0e-65 251.5 189 63.0
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 6.6e-65 251.1 189 63.0
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 6.6e-65 251.1 189 63.5
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 6.6e-65 251.1 189 63.5
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 8.6e-65 250.8 193 64.2
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 8.6e-65 250.8 189 62.4
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 8.6e-65 250.8 189 65.1
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 1.1e-64 250.4 189 64.6
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 1.1e-64 250.4 191 62.8
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 1.1e-64 250.4 191 62.8
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 1.1e-64 250.4 187 65.2
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 1.1e-64 250.4 188 63.8
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 1.5e-64 250.0 191 62.8
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 1.5e-64 250.0 191 62.8
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 1.5e-64 250.0 191 63.4
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 1.5e-64 250.0 191 64.4
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 1.9e-64 249.6 189 66.1
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 2.5e-64 249.2 191 63.9
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 2.5e-64 249.2 194 62.9
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 2.5e-64 249.2 189 63.5
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 4.3e-64 248.4 187 63.6
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 5.6e-64 248.1 189 63.0
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 1.6e-63 246.5 190 62.1
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 2.1e-63 246.1 189 62.4
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 2.8e-63 245.7 191 62.8
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 4.7e-63 245.0 189 61.9
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 4.7e-63 245.0 183 63.9
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 4.7e-63 245.0 185 58.9
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 1.1e-62 243.8 191 61.8
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 4.0e-62 241.9 188 62.8
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 8.9e-62 240.7 185 57.8
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 1.5e-61 240.0 176 67.0
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 2.8e-55 219.2 186 55.9
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 1.8e-54 216.5 187 56.7
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 6.8e-54 214.5 190 52.1
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 3.7e-52 208.8 156 65.4
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.9e-51 206.5 158 63.9
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 2.7e-50 202.6 157 62.4
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 6.6e-49 198.0 185 51.9
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.1e-48 197.2 156 62.8
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 6.2e-47 191.4 146 67.1
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 2.7e-42 176.0 150 60.7
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 9.9e-37 157.5 179 48.6
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 6.0e-34 148.3 187 46.5
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 2.5e-32 142.9 187 42.8
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 1.4e-30 137.1 188 40.4
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 6.4e-28 128.3 95 64.2
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 6.0e-26 121.7 188 36.7
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 1.1e-22 110.9 91 59.3
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 1.9e-16 90.1 50 80.0
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 1.4e-14 84.0 77 53.2
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 1.2e-10 70.9 155 32.9


User provided reference genes

Program Settings