Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 7.1e-104 380.6 186 100.0
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.3e-92 343.2 186 86.6
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.3e-92 343.2 186 86.6
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.4e-91 339.0 186 85.5
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 2.9e-89 332.0 182 84.6
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 1.6e-87 326.2 186 81.7
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 7.9e-87 323.9 172 88.4
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 1.3e-86 323.2 185 83.8
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 5.1e-86 321.2 181 84.0
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 6.7e-86 320.9 185 82.2
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 8.7e-86 320.5 185 81.1
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 1.1e-85 320.1 185 81.6
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.5e-85 319.7 185 82.7
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 1.9e-85 319.3 187 81.3
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 2.5e-85 318.9 185 81.1
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 3.3e-85 318.5 185 82.2
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 4.3e-85 318.2 187 80.7
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 5.6e-85 317.8 185 81.6
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 5.6e-85 317.8 187 79.1
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 5.6e-85 317.8 187 79.1
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 5.6e-85 317.8 187 79.1
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 5.6e-85 317.8 185 82.2
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 7.4e-85 317.4 187 79.1
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 7.4e-85 317.4 187 79.1
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 7.4e-85 317.4 187 79.1
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 9.6e-85 317.0 185 80.0
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 9.6e-85 317.0 185 81.1
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 1.3e-84 316.6 187 79.1
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 1.3e-84 316.6 181 81.2
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 1.3e-84 316.6 187 82.4
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.6e-84 316.2 187 78.6
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.6e-84 316.2 187 78.6
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 1.6e-84 316.2 187 80.2
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 1.6e-84 316.2 187 80.2
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 1.6e-84 316.2 187 80.2
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 2.1e-84 315.8 185 80.0
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 2.1e-84 315.8 185 80.5
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 2.1e-84 315.8 181 82.3
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 2.8e-84 315.5 185 80.0
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 3.7e-84 315.1 187 79.1
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 3.7e-84 315.1 185 80.5
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 4.8e-84 314.7 185 79.5
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 4.8e-84 314.7 185 80.0
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 6.2e-84 314.3 184 79.9
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 8.1e-84 313.9 185 80.0
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.1e-83 313.5 181 81.2
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 1.1e-83 313.5 185 80.5
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.1e-83 313.5 185 80.0
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 1.1e-83 313.5 185 79.5
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 1.4e-83 313.2 185 80.5
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.4e-83 313.2 185 80.0
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 1.4e-83 313.2 185 78.4
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 3.1e-83 312.0 185 78.4
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 3.1e-83 312.0 185 78.9
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 3.1e-83 312.0 186 77.4
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 4.0e-83 311.6 185 78.4
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 4.0e-83 311.6 185 79.5
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 4.0e-83 311.6 186 76.9
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 5.3e-83 311.2 185 80.0
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 5.3e-83 311.2 184 79.3
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 6.9e-83 310.8 185 78.4
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 6.9e-83 310.8 181 79.6
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 6.9e-83 310.8 185 77.8
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 6.9e-83 310.8 187 77.5
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.2e-82 310.1 185 80.5
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 1.2e-82 310.1 185 77.3
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 1.2e-82 310.1 185 79.5
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 1.5e-82 309.7 187 77.5
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 1.5e-82 309.7 187 77.5
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 1.5e-82 309.7 187 77.5
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 2.0e-82 309.3 181 78.5
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 2.6e-82 308.9 185 77.3
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 3.4e-82 308.5 185 77.8
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 4.5e-82 308.1 185 77.8
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 4.5e-82 308.1 200 74.0
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 4.5e-82 308.1 188 77.1
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 4.5e-82 308.1 188 77.1
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 4.5e-82 308.1 187 78.6
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 4.5e-82 308.1 185 77.3
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 5.8e-82 307.8 185 77.8
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 5.8e-82 307.8 185 77.8
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 5.8e-82 307.8 185 76.2
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 7.6e-82 307.4 185 79.5
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 9.9e-82 307.0 185 77.8
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 9.9e-82 307.0 185 77.3
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 1.3e-81 306.6 185 77.8
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 1.3e-81 306.6 185 76.8
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 1.3e-81 306.6 185 77.3
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 1.3e-81 306.6 201 73.6
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.7e-81 306.2 181 77.3
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 1.7e-81 306.2 186 75.8
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 2.9e-81 305.4 185 77.3
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 2.9e-81 305.4 185 77.3
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 2.9e-81 305.4 185 77.3
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 2.9e-81 305.4 185 77.3
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 2.9e-81 305.4 185 77.8
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 3.8e-81 305.1 185 76.8
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 3.8e-81 305.1 185 75.7
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 4.9e-81 304.7 194 74.7
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 4.9e-81 304.7 185 76.8
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 6.4e-81 304.3 199 74.9
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 6.4e-81 304.3 185 76.2
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 8.4e-81 303.9 185 77.3
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 8.4e-81 303.9 204 73.0
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 8.4e-81 303.9 184 76.6
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 8.4e-81 303.9 187 77.0
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 8.4e-81 303.9 187 76.5
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 1.1e-80 303.5 181 77.3
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 1.9e-80 302.8 185 75.7
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 1.9e-80 302.8 185 75.1
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 1.9e-80 302.8 187 75.9
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 2.4e-80 302.4 185 75.7
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 3.2e-80 302.0 185 75.7
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 5.5e-80 301.2 185 75.7
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 7.1e-80 300.8 181 77.3
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 7.1e-80 300.8 181 77.3
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 1.6e-79 299.7 185 76.2
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 3.5e-79 298.5 185 75.7
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 6.0e-79 297.7 179 77.1
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 1.3e-78 296.6 187 74.9
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 1.8e-78 296.2 187 74.9
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 2.3e-78 295.8 185 73.0
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 6.7e-78 294.3 204 70.6
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 9.6e-77 290.4 183 73.2
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 2.1e-76 289.3 171 80.7
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 1.8e-75 286.2 181 74.0
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 3.1e-75 285.4 171 77.2
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 4.0e-75 285.0 208 66.8
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 9.0e-75 283.9 163 81.0
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 9.0e-75 283.9 209 67.0
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 4.9e-73 278.1 241 59.3
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 1.1e-69 266.9 185 72.4
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.1e-67 258.8 185 68.6
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 9.0e-67 257.3 151 80.1
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 1.2e-66 256.9 187 67.9
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 4.5e-66 255.0 147 82.3
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 4.5e-66 255.0 158 77.2
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 7.7e-66 254.2 185 68.1
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 2.9e-65 252.3 183 67.8
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 7.9e-63 244.2 142 78.2
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 1.0e-62 243.8 172 64.0
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 6.7e-62 241.1 168 64.3
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 4.3e-61 238.4 132 84.1
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 1.7e-60 236.5 185 65.9
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 2.9e-57 225.7 158 65.2
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 6.7e-54 214.5 185 60.5
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 6.7e-54 214.5 185 60.5
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 1.4e-51 206.8 163 59.5
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 7.0e-51 204.5 167 55.1
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 2.6e-50 202.6 122 77.9
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 7.4e-45 184.5 98 84.7
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 2.8e-44 182.6 103 80.6
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 1.7e-41 173.3 104 79.8
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 3.8e-41 172.2 98 77.6
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 2.1e-39 166.4 102 73.5
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.8e-38 163.3 103 68.9
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.5e-37 160.2 175 49.1
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 9.4e-32 141.0 83 83.1
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 1.1e-24 117.5 68 79.4
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 2.5e-24 116.3 135 49.6
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.8e-15 86.3 50 84.0
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 1.0e-14 84.3 50 82.0
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 5.8e-13 78.6 47 80.9
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 7.0e-11 71.6 43 79.1
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 2.3e-09 66.6 41 68.3
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 2.3e-09 66.6 70 51.4
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 3.0e-09 66.2 41 68.3
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 3.9e-09 65.9 45 68.9
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 1.1e-08 64.3 39 66.7
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 2.1e-07 60.1 67 43.3


User provided reference genes

Program Settings