Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 2.6e-155 552.0 275 100.0
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 2.9e-106 389.0 271 71.2
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 2.7e-99 365.9 272 66.5
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 7.3e-97 357.8 247 72.1
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 5.2e-95 351.7 247 70.4
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 7.5e-94 347.8 247 70.0
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 9.8e-94 347.4 247 69.6
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 1.7e-93 346.7 271 64.6
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 1.7e-93 346.7 247 70.0
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 1.7e-93 346.7 247 69.6
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 2.2e-93 346.3 247 69.2
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 3.7e-93 345.5 247 69.6
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 3.7e-93 345.5 247 69.6
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 6.4e-93 344.7 247 69.6
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 6.4e-93 344.7 247 69.6
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 6.4e-93 344.7 247 68.8
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 6.4e-93 344.7 247 69.2
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 8.3e-93 344.4 247 68.8
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 1.1e-92 344.0 247 69.2
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 1.4e-92 343.6 247 68.4
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 1.9e-92 343.2 247 68.4
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 1.9e-92 343.2 247 68.8
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 2.4e-92 342.8 247 68.8
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 4.1e-92 342.0 247 68.8
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 4.1e-92 342.0 247 68.8
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 4.1e-92 342.0 247 68.8
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 4.1e-92 342.0 247 68.8
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 7.0e-92 341.3 247 68.4
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 7.0e-92 341.3 247 68.0
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 7.0e-92 341.3 247 67.2
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 7.0e-92 341.3 247 68.4
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 9.2e-92 340.9 247 69.2
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.2e-91 340.5 247 68.4
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.2e-91 340.5 247 68.4
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 1.2e-91 340.5 247 68.8
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.6e-91 340.1 247 68.8
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 2.0e-91 339.7 251 66.1
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 2.7e-91 339.3 247 68.4
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 2.7e-91 339.3 247 68.0
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 2.7e-91 339.3 247 68.8
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 3.5e-91 339.0 232 72.0
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 3.5e-91 339.0 247 68.8
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 3.5e-91 339.0 247 68.0
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 4.6e-91 338.6 247 67.6
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 6.0e-91 338.2 247 67.6
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 7.8e-91 337.8 247 67.6
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 7.8e-91 337.8 247 68.8
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 1.0e-90 337.4 247 68.0
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 1.0e-90 337.4 260 65.4
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 1.3e-90 337.0 254 63.8
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 1.7e-90 336.7 247 68.0
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 2.3e-90 336.3 247 68.4
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 2.3e-90 336.3 247 68.4
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 2.3e-90 336.3 247 68.0
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 3.9e-90 335.5 247 68.0
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 5.0e-90 335.1 247 65.2
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 5.0e-90 335.1 245 67.3
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 5.0e-90 335.1 247 67.6
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 5.0e-90 335.1 247 67.6
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 8.6e-90 334.3 247 67.2
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 1.1e-89 334.0 247 67.6
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 1.1e-89 334.0 247 65.6
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 1.5e-89 333.6 247 67.2
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 1.9e-89 333.2 247 67.6
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 1.9e-89 333.2 247 65.2
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 5.6e-89 331.6 247 66.4
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 5.6e-89 331.6 247 65.2
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 7.3e-89 331.3 247 65.2
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 7.3e-89 331.3 247 65.2
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 7.3e-89 331.3 247 65.2
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 7.3e-89 331.3 247 65.2
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 7.3e-89 331.3 247 65.2
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 9.5e-89 330.9 247 66.4
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 2.1e-88 329.7 247 66.8
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 2.8e-88 329.3 247 65.2
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 2.8e-88 329.3 247 64.8
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 2.8e-88 329.3 247 64.8
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 4.7e-88 328.6 247 65.2
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 4.7e-88 328.6 247 65.6
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 6.2e-88 328.2 247 64.4
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 6.2e-88 328.2 247 66.0
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 6.2e-88 328.2 247 66.0
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 6.2e-88 328.2 247 66.0
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 8.1e-88 327.8 253 66.4
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 1.4e-87 327.0 247 66.0
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 2.3e-87 326.2 247 64.4
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 2.3e-87 326.2 252 63.9
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 5.2e-87 325.1 247 66.8
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 4.4e-86 322.0 248 65.7
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 4.4e-86 322.0 247 65.6
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 4.4e-86 322.0 247 65.6
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 4.4e-86 322.0 249 63.9
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 5.8e-86 321.6 247 66.0
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 7.5e-86 321.2 245 63.7
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 7.5e-86 321.2 241 64.7
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 3.2e-84 315.8 261 62.1
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 7.1e-84 314.7 261 61.7
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 9.2e-84 314.3 232 68.1
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 2.1e-83 313.2 292 56.8
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 2.5e-81 306.2 247 63.6
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 4.4e-78 295.4 218 67.0
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 1.1e-76 290.8 273 57.9
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 2.7e-75 286.2 218 65.1
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 3.3e-73 279.3 205 65.9
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 4.7e-72 275.4 247 59.1
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 4.4e-70 268.9 200 65.5
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 1.3e-69 267.3 200 66.5
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 9.3e-68 261.2 247 57.1
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 1.6e-67 260.4 247 55.1
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 1.3e-64 250.8 291 48.5
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 4.9e-61 238.8 247 49.0
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.4e-55 220.7 278 44.2
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 2.4e-55 219.9 160 67.5
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 1.3e-53 214.2 160 66.2
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 4.0e-47 192.6 133 70.7
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 6.9e-47 191.8 143 65.0
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 1.9e-41 173.7 132 67.4
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 1.1e-39 167.9 132 65.2
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 1.5e-38 164.1 157 51.0
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 1.3e-37 161.0 117 63.2
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 2.2e-37 160.2 200 48.0
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 9.3e-36 154.8 112 67.9
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 2.3e-34 150.2 105 69.5
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 1.9e-33 147.1 116 65.5
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 5.7e-33 145.6 105 67.6
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 1.3e-32 144.4 105 64.8
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 1.6e-32 144.1 105 65.7
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 1.6e-27 127.5 105 63.8
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 2.1e-27 127.1 91 60.4
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 9.7e-25 118.2 117 54.7
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 5.3e-23 112.5 91 61.5
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 2.3e-18 97.1 103 51.5
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 2.6e-17 93.6 97 54.6
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 2.8e-16 90.1 79 59.5
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 1.2e-11 74.7 44 79.5
HPP92_020839 Vanilla planifolia HOM05D005529 ORTHO05D006800 6.7e-10 68.9 55 60.0


User provided reference genes

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