Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 9.3e-170 600.1 305 100.0
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 4.6e-108 395.2 301 65.4
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 4.3e-106 388.7 301 63.5
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.2e-105 387.1 301 62.8
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 2.4e-101 372.9 304 60.2
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 3.0e-99 365.9 308 61.0
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 3.9e-99 365.5 301 58.8
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 1.5e-98 363.6 302 57.6
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.9e-98 363.2 302 57.6
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 2.5e-98 362.8 308 59.1
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 4.3e-98 362.1 308 59.1
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 9.5e-98 360.9 309 58.6
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 2.8e-97 359.4 302 57.3
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 4.7e-97 358.6 314 57.6
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 1.1e-96 357.5 305 60.0
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 1.4e-96 357.1 308 59.1
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 1.8e-96 356.7 303 57.4
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 1.8e-96 356.7 308 57.8
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 2.3e-96 356.3 314 57.3
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 2.3e-96 356.3 306 59.8
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 4.0e-96 355.5 306 59.8
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 5.2e-96 355.1 302 56.6
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 6.8e-96 354.8 301 59.8
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 8.9e-96 354.4 304 60.2
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 1.2e-95 354.0 305 58.4
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 1.2e-95 354.0 306 58.5
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 1.5e-95 353.6 302 59.3
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 1.5e-95 353.6 308 58.1
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 2.6e-95 352.8 312 56.1
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 2.6e-95 352.8 306 59.2
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 3.4e-95 352.4 308 57.8
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 4.4e-95 352.1 311 58.8
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 4.4e-95 352.1 305 58.4
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 5.8e-95 351.7 314 58.9
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 7.5e-95 351.3 307 56.4
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 7.5e-95 351.3 304 57.2
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 7.5e-95 351.3 305 59.3
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 7.5e-95 351.3 308 59.1
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 9.8e-95 350.9 302 59.3
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 1.7e-94 350.1 308 58.8
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 1.7e-94 350.1 295 59.3
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.7e-94 350.1 310 57.4
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 2.2e-94 349.7 308 57.5
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 3.7e-94 349.0 305 57.7
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 3.7e-94 349.0 311 58.8
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 3.7e-94 349.0 319 55.2
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 4.9e-94 348.6 301 59.1
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 6.4e-94 348.2 310 57.4
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 8.3e-94 347.8 308 58.1
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 8.3e-94 347.8 301 58.1
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 8.3e-94 347.8 310 57.4
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 1.4e-93 347.1 303 56.4
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 1.4e-93 347.1 301 58.5
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 1.4e-93 347.1 302 57.0
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 1.9e-93 346.7 305 57.4
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 1.9e-93 346.7 302 57.6
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 3.2e-93 345.9 308 57.8
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 3.2e-93 345.9 313 58.5
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 4.1e-93 345.5 302 57.9
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 4.1e-93 345.5 301 59.5
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 5.4e-93 345.1 309 57.9
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 5.4e-93 345.1 303 58.4
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 5.4e-93 345.1 319 57.1
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 7.1e-93 344.7 305 57.4
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 1.2e-92 344.0 312 57.4
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 1.2e-92 344.0 312 57.4
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 2.1e-92 343.2 305 57.0
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 2.1e-92 343.2 299 57.2
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 2.1e-92 343.2 307 56.0
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 3.5e-92 342.4 305 57.7
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 3.5e-92 342.4 330 53.9
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 4.6e-92 342.0 307 57.3
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 4.6e-92 342.0 301 57.8
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 7.8e-92 341.3 302 57.0
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 1.0e-91 340.9 331 52.6
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.0e-91 340.9 302 58.6
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 1.3e-91 340.5 309 57.3
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 1.3e-91 340.5 312 57.4
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 1.3e-91 340.5 312 57.1
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 1.7e-91 340.1 306 57.5
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.7e-91 340.1 301 56.8
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 1.7e-91 340.1 300 56.3
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 3.9e-91 339.0 311 55.3
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 3.9e-91 339.0 302 56.3
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 5.1e-91 338.6 304 58.2
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 8.6e-91 337.8 294 57.1
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.1e-90 337.4 307 55.7
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 4.3e-90 335.5 301 55.8
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 4.3e-90 335.5 302 57.0
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 5.6e-90 335.1 303 55.4
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 9.5e-90 334.3 307 55.7
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 2.1e-89 333.2 308 55.8
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 3.6e-89 332.4 305 55.7
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 1.4e-88 330.5 305 55.1
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 4.0e-88 328.9 328 50.6
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 6.4e-86 321.6 311 54.7
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 5.4e-85 318.5 276 57.6
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 6.0e-84 315.1 351 50.4
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 1.5e-82 310.5 272 59.9
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 2.1e-81 306.6 274 59.1
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.4e-80 303.9 231 62.8
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.2e-79 300.8 315 49.2
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 4.9e-78 295.4 230 63.5
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 1.6e-76 290.4 335 49.6
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 8.7e-75 284.6 374 44.1
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 3.1e-72 276.2 294 49.7
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 9.9e-71 271.2 224 57.1
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 2.3e-67 260.0 274 50.0
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 5.3e-64 248.8 212 59.9
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 4.5e-63 245.7 228 57.9
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 9.0e-56 221.5 191 56.0
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 6.5e-54 215.3 282 46.1
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 2.5e-53 213.4 173 61.8
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 3.5e-52 209.5 181 55.2
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.4e-48 196.8 203 52.2
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 1.7e-41 174.1 152 55.9
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.8e-40 170.6 327 34.6
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 5.9e-31 139.0 205 44.9
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 9.4e-29 131.7 155 45.8
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 5.7e-26 122.5 107 56.1
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.4e-24 117.9 227 37.9
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 9.1e-24 115.2 143 42.7
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 1.2e-23 114.8 122 51.6
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 1.5e-18 97.8 175 37.1
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 2.0e-15 87.4 58 72.4
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 2.7e-15 87.0 45 77.8
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 4.5e-15 86.3 121 47.1
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 1.3e-14 84.7 114 44.7
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 2.2e-14 84.0 67 55.2
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 3.2e-13 80.1 120 45.0
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 2.3e-11 73.9 95 42.1
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 2.2e-09 67.4 73 46.6
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.2e-09 67.4 80 45.0
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 3.7e-09 66.6 75 48.0
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 1.4e-08 64.7 91 44.0
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 9.1e-08 62.0 50 54.0
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.0e-06 58.5 60 53.3
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 2.3e-06 57.4 83 43.4


User provided reference genes

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