Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 4.9e-37 157.1 72 100.0
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 3.9e-18 94.4 72 59.7
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 1.9e-17 92.0 71 59.2
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 4.3e-17 90.9 72 58.3
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 5.7e-17 90.5 72 58.3
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 9.7e-17 89.7 56 66.1
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 1.3e-16 89.4 71 56.3
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 3.1e-15 84.7 70 51.4
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 4.1e-15 84.3 72 52.8
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 6.9e-15 83.6 72 51.4
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 6.9e-15 83.6 70 50.0
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 6.9e-15 83.6 72 50.0
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 9.0e-15 83.2 72 51.4
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 9.0e-15 83.2 72 51.4
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 9.0e-15 83.2 72 50.0
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 9.0e-15 83.2 70 47.1
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 1.2e-14 82.8 72 48.6
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 1.2e-14 82.8 72 51.4
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.2e-14 82.8 70 47.1
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 1.5e-14 82.4 72 48.6
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 2.6e-14 81.6 72 51.4
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 2.6e-14 81.6 72 50.0
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 3.4e-14 81.3 72 50.0
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 3.4e-14 81.3 72 51.4
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 3.4e-14 81.3 72 50.0
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 3.4e-14 81.3 72 50.0
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 3.4e-14 81.3 72 50.0
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 4.5e-14 80.9 72 50.0
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 4.5e-14 80.9 72 50.0
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 4.5e-14 80.9 72 51.4
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 4.5e-14 80.9 72 50.0
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 48.6
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 48.6
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 48.6
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 48.6
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 48.6
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 48.6
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 48.6
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 48.6
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 48.6
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 48.6
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 48.6
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 48.6
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 47.2
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 48.6
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 48.6
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 48.6
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 48.6
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 48.6
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 55.6
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 1.0e-13 79.7 72 50.0
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 1.0e-13 79.7 72 48.6
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 1.0e-13 79.7 72 48.6
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 1.3e-13 79.3 72 47.2
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 1.3e-13 79.3 72 48.6
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 1.7e-13 79.0 72 48.6
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 2.2e-13 78.6 72 48.6
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 2.2e-13 78.6 72 47.2
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 2.2e-13 78.6 72 47.2
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 2.2e-13 78.6 72 47.2
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 2.2e-13 78.6 72 47.2
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 2.2e-13 78.6 71 47.9
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 2.9e-13 78.2 72 48.6
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 2.9e-13 78.2 72 48.6
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 2.9e-13 78.2 72 48.6
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 3.8e-13 77.8 69 47.8
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 3.8e-13 77.8 72 48.6
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 5.0e-13 77.4 72 47.2
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 5.0e-13 77.4 72 47.2
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 5.0e-13 77.4 72 47.2
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 5.0e-13 77.4 70 47.1
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 6.5e-13 77.0 72 50.0
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 8.5e-13 76.6 72 45.8
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 8.5e-13 76.6 70 45.7
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 8.5e-13 76.6 72 44.4
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 8.5e-13 76.6 70 45.7
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 1.1e-12 76.3 71 42.3
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 1.1e-12 76.3 72 44.4
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 1.9e-12 75.5 72 44.4
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 1.9e-12 75.5 70 44.3
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 2.5e-12 75.1 72 45.8
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 2.5e-12 75.1 71 42.3
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 2.5e-12 75.1 70 42.9
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 2.5e-12 75.1 72 47.2
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 2.5e-12 75.1 71 43.7
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 7.2e-12 73.6 68 47.1
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 7.2e-12 73.6 68 47.1
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 7.2e-12 73.6 68 47.1
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 1.2e-11 72.8 71 43.7
SMO141G0046 Selaginella moellendorffii HOM05D005730 ORTHO05D007038 1.6e-11 72.4 71 42.3
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 2.1e-11 72.0 71 43.7
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 2.1e-11 72.0 71 43.7
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 2.1e-11 72.0 71 43.7
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 2.7e-11 71.6 70 45.7
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 4.6e-11 70.9 68 44.1
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 6.1e-11 70.5 59 50.8
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 2.3e-10 68.6 61 42.6
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 8.8e-10 66.6 67 44.8
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 4.3e-09 64.3 68 42.6
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 5.7e-09 63.9 66 42.4
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 5.7e-09 63.9 56 46.4
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 7.4e-09 63.5 56 44.6
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 7.4e-09 63.5 66 40.9
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 7.4e-09 63.5 56 42.9
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 7.4e-09 63.5 56 42.9
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 7.4e-09 63.5 56 42.9
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 9.7e-09 63.2 56 42.9
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 1.3e-08 62.8 56 42.9
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 2.2e-08 62.0 56 46.4
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 2.2e-08 62.0 50 46.0
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 2.8e-08 61.6 56 46.4
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 3.7e-08 61.2 57 43.9
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 3.7e-08 61.2 56 44.6
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 3.7e-08 61.2 65 38.5
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 4.8e-08 60.8 57 45.6
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 6.3e-08 60.5 56 44.6
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 6.3e-08 60.5 59 40.7
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 8.2e-08 60.1 63 41.3
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 8.2e-08 60.1 57 42.1
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 8.2e-08 60.1 69 37.7
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 1.1e-07 59.7 56 46.4
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 1.4e-07 59.3 56 44.6
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 1.4e-07 59.3 56 44.6
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 1.8e-07 58.9 56 42.9
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 1.8e-07 58.9 56 42.9
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 1.8e-07 58.9 56 42.9
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 1.8e-07 58.9 56 42.9
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 1.8e-07 58.9 52 44.2
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 2.4e-07 58.5 56 41.1
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 5.3e-07 57.4 56 42.9
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 6.9e-07 57.0 52 46.2
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.5e-06 55.8 56 41.1
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 7.7e-06 53.5 48 41.7


User provided reference genes

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