Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 1.0e-199 699.9 356 100.0
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 3.7e-109 399.1 312 64.1
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.7e-96 356.3 309 58.9
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 3.6e-96 355.9 307 58.6
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 1.0e-95 354.4 309 58.6
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.8e-95 353.6 309 58.3
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 2.3e-95 353.2 319 57.7
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 4.0e-95 352.4 306 57.2
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 4.0e-95 352.4 312 56.7
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 4.0e-95 352.4 312 58.7
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 2.0e-94 350.1 309 57.6
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 2.6e-94 349.7 312 57.4
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 2.6e-94 349.7 312 57.4
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 3.3e-94 349.4 312 57.4
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 3.3e-94 349.4 316 55.7
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 4.4e-94 349.0 319 56.7
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 4.4e-94 349.0 319 56.7
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 5.7e-94 348.6 305 57.0
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 5.7e-94 348.6 307 57.3
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 7.5e-94 348.2 306 57.5
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 1.3e-93 347.4 305 57.4
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.7e-93 347.1 316 55.7
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 2.2e-93 346.7 307 57.7
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 3.7e-93 345.9 308 56.8
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 4.8e-93 345.5 306 57.2
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 4.8e-93 345.5 317 56.5
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 8.2e-93 344.7 317 56.2
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 1.1e-92 344.4 314 55.7
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.1e-92 344.4 321 55.1
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.4e-92 344.0 306 56.9
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 1.8e-92 343.6 307 55.7
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.4e-92 343.2 309 56.6
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 3.1e-92 342.8 307 55.4
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 3.1e-92 342.8 305 55.4
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 3.1e-92 342.8 307 57.3
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 5.3e-92 342.0 307 56.4
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 7.0e-92 341.7 312 56.1
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 9.1e-92 341.3 307 56.0
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 9.1e-92 341.3 306 57.2
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 1.2e-91 340.9 307 56.4
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 1.6e-91 340.5 306 57.5
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 1.6e-91 340.5 307 58.6
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 2.0e-91 340.1 323 54.2
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 2.0e-91 340.1 307 56.7
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 2.7e-91 339.7 311 56.6
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 2.7e-91 339.7 306 56.5
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 2.7e-91 339.7 307 57.3
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 3.5e-91 339.3 316 55.4
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 3.5e-91 339.3 315 55.2
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 3.5e-91 339.3 309 56.0
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 5.9e-91 338.6 307 55.4
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 7.7e-91 338.2 266 61.7
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 7.7e-91 338.2 314 56.1
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 1.0e-90 337.8 307 56.4
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.7e-90 337.0 314 56.1
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 2.2e-90 336.7 317 54.6
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 3.8e-90 335.9 315 54.9
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 6.5e-90 335.1 311 56.3
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 8.5e-90 334.7 314 54.5
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 1.1e-89 334.3 308 56.5
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 1.1e-89 334.3 317 54.3
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 1.5e-89 334.0 315 54.0
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 1.5e-89 334.0 308 56.2
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.9e-89 333.6 307 55.4
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 5.5e-89 332.0 269 59.5
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 1.6e-88 330.5 307 53.4
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 3.6e-88 329.3 309 54.4
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 3.6e-88 329.3 315 54.9
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 4.7e-88 328.9 267 60.7
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 4.7e-88 328.9 307 54.4
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 6.1e-88 328.6 310 54.2
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 8.0e-88 328.2 307 54.7
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 1.8e-87 327.0 307 54.7
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 1.8e-87 327.0 308 54.5
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 4.0e-87 325.9 305 54.1
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 4.0e-87 325.9 334 53.0
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 6.8e-87 325.1 330 52.7
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 8.8e-87 324.7 267 59.2
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 1.2e-86 324.3 299 54.2
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 2.0e-86 323.6 307 53.7
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 2.6e-86 323.2 316 52.8
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 2.6e-86 323.2 309 53.1
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 3.4e-86 322.8 335 51.3
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 3.4e-86 322.8 312 53.2
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 5.7e-86 322.0 307 54.4
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 7.5e-86 321.6 308 52.6
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 9.8e-86 321.2 307 53.7
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 1.7e-85 320.5 308 55.2
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 2.2e-85 320.1 267 58.8
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 2.8e-85 319.7 264 60.2
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 6.3e-85 318.5 312 51.9
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 6.3e-85 318.5 313 54.0
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.4e-84 317.4 328 50.6
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 2.4e-84 316.6 309 52.4
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 3.1e-84 316.2 276 58.0
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 3.1e-84 316.2 332 50.6
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 3.1e-84 316.2 313 51.1
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 7.0e-84 315.1 373 47.5
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 9.1e-84 314.7 309 52.8
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 2.7e-83 313.2 309 54.0
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 3.5e-83 312.8 314 52.2
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 3.5e-83 312.8 314 52.5
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 7.7e-83 311.6 307 51.5
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 1.0e-82 311.2 352 48.6
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 8.5e-82 308.1 319 51.1
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.5e-81 307.4 309 52.4
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 1.5e-81 307.4 314 51.6
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.5e-81 307.4 313 50.2
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 7.2e-81 305.1 294 53.4
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 1.2e-80 304.3 314 50.6
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 6.1e-80 302.0 342 48.2
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.4e-79 300.8 313 50.8
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.0e-79 299.7 308 51.9
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.6e-78 296.6 335 47.8
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 5.7e-78 295.4 310 55.2
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 1.1e-76 291.2 251 57.4
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 1.8e-76 290.4 310 50.3
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 3.5e-75 286.2 254 55.1
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 8.6e-74 281.6 307 49.5
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.2e-72 277.7 264 53.0
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 2.1e-72 276.9 240 56.2
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.7e-69 266.2 313 47.9
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.3e-66 257.7 266 55.3
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 1.1e-65 254.6 228 55.3
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 2.0e-62 243.8 351 42.7
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 4.4e-62 242.7 228 53.9
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 2.9e-61 240.0 195 59.5
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 1.1e-60 238.0 312 44.9
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 2.0e-59 233.8 181 61.3
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.0e-59 232.3 212 54.7
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 6.6e-58 228.8 209 53.6
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.7e-56 222.6 226 54.4
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 2.6e-54 216.9 311 43.1
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 3.7e-53 213.0 283 43.1
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 7.8e-51 205.3 442 34.8
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 8.1e-48 195.3 151 59.6
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 5.2e-47 192.6 169 58.6
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.0e-46 190.7 204 50.0
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.6e-46 190.3 183 52.5
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 5.8e-46 189.1 192 52.6
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.3e-45 188.0 179 53.1
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 3.2e-44 183.3 214 46.7
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 5.4e-44 182.6 147 61.9
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 9.2e-44 181.8 167 53.9
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 2.1e-43 180.6 297 42.8
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 3.5e-43 179.9 146 62.3
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 7.3e-41 172.2 164 56.1
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 1.2e-40 171.4 164 50.0
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 1.8e-39 167.5 220 43.2
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 4.0e-39 166.4 240 42.1
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 8.9e-39 165.2 146 58.2
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 9.9e-38 161.8 132 62.9
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 2.4e-36 157.1 184 49.5
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 5.6e-33 146.0 138 51.4
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.3e-32 144.8 193 42.5
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 1.1e-28 131.7 120 53.3
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 1.1e-28 131.7 120 53.3
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.5e-27 126.7 178 41.0
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 7.9e-27 125.6 111 60.4
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 3.6e-24 116.7 106 55.7
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 4.9e-21 106.3 156 44.2
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 2.3e-18 97.4 84 56.0
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.7e-16 90.1 67 64.2
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 5.3e-15 86.3 131 38.2
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.5e-11 73.6 38 78.9
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 5.1e-10 69.7 84 45.2
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 5.1e-10 69.7 45 68.9
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 5.1e-10 69.7 82 48.8
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 9.6e-09 65.5 62 51.6
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 6.3e-08 62.8 83 47.0
SMO170G0022 Selaginella moellendorffii HOM05D003898 ORTHO05D374340 1.5e-06 58.2 95 37.9


User provided reference genes

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