Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.2e-228 796.2 396 100.0
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 5.3e-125 451.8 299 72.9
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 5.2e-112 408.7 284 69.7
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 2.2e-102 376.7 305 60.0
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 6.3e-102 375.2 390 52.1
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 2.3e-99 366.7 294 63.6
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 8.6e-99 364.8 312 58.3
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 2.5e-98 363.2 304 58.6
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 3.3e-98 362.8 343 54.8
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 3.3e-98 362.8 310 58.7
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 4.2e-98 362.5 383 50.1
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 4.2e-98 362.5 307 58.6
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 7.2e-98 361.7 351 54.4
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 9.5e-98 361.3 293 59.4
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 9.5e-98 361.3 349 55.3
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 1.2e-97 360.9 367 51.2
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-97 360.5 355 51.8
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.6e-97 360.5 312 58.0
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.6e-97 360.5 301 58.8
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 2.1e-97 360.1 336 54.5
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 2.1e-97 360.1 304 58.9
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 2.1e-97 360.1 391 51.4
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 2.8e-97 359.8 363 53.2
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 2.8e-97 359.8 351 53.3
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 3.6e-97 359.4 301 60.5
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 3.6e-97 359.4 310 57.7
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 3.6e-97 359.4 301 59.1
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 6.1e-97 358.6 309 58.9
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.1e-97 358.6 383 50.1
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 6.1e-97 358.6 370 52.7
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 1.0e-96 357.8 284 62.0
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 1.0e-96 357.8 291 61.2
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 1.4e-96 357.5 301 59.5
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 1.4e-96 357.5 373 52.5
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 1.8e-96 357.1 357 53.2
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 1.8e-96 357.1 323 56.0
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 1.8e-96 357.1 291 61.2
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 4.0e-96 355.9 293 60.1
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 4.0e-96 355.9 295 59.0
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 5.2e-96 355.5 306 56.9
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 6.8e-96 355.1 359 53.2
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 6.8e-96 355.1 316 57.0
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 6.8e-96 355.1 301 58.1
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 8.9e-96 354.8 341 54.5
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 8.9e-96 354.8 301 58.5
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 1.2e-95 354.4 295 58.6
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 1.2e-95 354.4 308 57.8
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.5e-95 354.0 291 58.4
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 1.5e-95 354.0 303 58.7
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 1.5e-95 354.0 339 54.6
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 2.0e-95 353.6 331 52.9
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 2.0e-95 353.6 291 59.8
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 2.0e-95 353.6 391 50.6
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 2.0e-95 353.6 373 51.7
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 2.0e-95 353.6 295 58.6
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 2.6e-95 353.2 295 59.0
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 2.6e-95 353.2 292 60.3
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 3.4e-95 352.8 310 55.8
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 4.4e-95 352.4 295 59.0
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 5.7e-95 352.1 295 58.0
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.7e-95 352.1 299 57.9
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 7.5e-95 351.7 302 58.9
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 9.8e-95 351.3 354 52.0
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.3e-94 350.9 301 57.5
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.3e-94 350.9 291 60.1
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.3e-94 350.9 307 56.4
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 1.3e-94 350.9 308 56.5
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 1.3e-94 350.9 318 54.7
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 1.3e-94 350.9 301 57.1
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 1.7e-94 350.5 316 57.3
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 3.7e-94 349.4 300 57.3
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 6.3e-94 348.6 368 50.8
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 6.3e-94 348.6 325 56.9
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 8.3e-94 348.2 387 50.6
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 3.1e-93 346.3 327 54.7
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 4.1e-93 345.9 338 54.4
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 4.1e-93 345.9 298 57.7
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 9.2e-93 344.7 308 56.8
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 1.6e-92 344.0 321 54.8
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 1.6e-92 344.0 297 58.9
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 1.6e-92 344.0 314 56.1
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 2.0e-92 343.6 291 57.7
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 2.7e-92 343.2 290 59.0
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 2.7e-92 343.2 306 56.9
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 7.8e-92 341.7 353 53.0
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 3.9e-91 339.3 369 51.2
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 3.9e-91 339.3 328 52.7
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 5.6e-90 335.5 308 55.2
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 9.5e-90 334.7 367 51.2
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 9.5e-90 334.7 300 56.3
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 4.0e-88 329.3 307 55.4
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 9.2e-85 318.2 420 43.3
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 3.5e-84 316.2 266 59.4
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 3.5e-84 316.2 266 59.4
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-82 311.2 306 50.7
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 1.9e-82 310.5 277 55.6
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 9.5e-82 308.1 247 61.5
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 2.2e-78 297.0 334 48.8
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 2.3e-75 287.0 288 49.7
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 3.0e-75 286.6 286 51.0
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 1.5e-74 284.3 288 49.3
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 1.5e-74 284.3 287 50.2
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.5e-74 283.5 287 48.1
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 3.3e-74 283.1 287 50.2
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 5.6e-74 282.3 287 50.2
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.6e-74 282.3 286 49.3
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 9.5e-74 281.6 286 50.3
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.6e-73 280.8 287 50.5
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.6e-73 280.8 299 47.8
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 2.8e-73 280.0 286 50.3
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 1.1e-72 278.1 296 48.3
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.4e-72 277.7 334 47.0
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.3e-72 276.9 287 49.1
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.3e-72 276.9 287 49.1
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.2e-72 275.8 286 49.7
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 8.9e-72 275.0 287 48.1
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 1.5e-71 274.2 287 47.7
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 1.5e-71 274.2 287 47.7
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 7.5e-71 271.9 287 48.8
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 9.9e-71 271.6 287 48.1
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.7e-70 269.6 296 48.0
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 4.9e-70 269.2 292 46.6
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 1.1e-69 268.1 293 48.8
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.4e-69 267.7 287 48.4
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.2e-69 266.5 287 45.6
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 4.1e-69 266.2 287 48.1
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 9.2e-69 265.0 290 47.9
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.1e-68 263.8 293 45.7
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.0e-67 261.5 285 46.7
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 2.3e-67 260.4 288 49.0
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 2.3e-67 260.4 288 48.6
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 3.9e-67 259.6 272 49.3
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 6.6e-67 258.8 290 46.9
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 6.6e-67 258.8 287 46.0
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 8.6e-67 258.5 300 46.0
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 1.1e-66 258.1 289 45.0
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 4.7e-65 252.7 283 47.0
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 6.2e-65 252.3 214 57.0
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 1.4e-64 251.1 221 56.1
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.5e-63 247.7 231 54.5
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.2e-62 243.8 265 46.4
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.6e-60 237.7 211 55.0
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 1.5e-58 231.1 283 44.2
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 6.2e-57 225.7 356 37.6
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 2.4e-56 223.8 288 44.8
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 6.9e-56 222.2 274 45.3
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 1.5e-55 221.1 271 44.6
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 2.0e-55 220.7 244 46.3
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 2.3e-51 207.2 330 38.2
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 2.0e-47 194.1 183 52.5
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 2.0e-47 194.1 183 52.5
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 1.3e-46 191.4 294 38.8
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 9.3e-45 185.3 219 47.0
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 6.7e-43 179.1 214 45.8
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 1.1e-34 151.8 214 38.8
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 2.0e-31 141.0 150 47.3
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 2.9e-30 137.1 127 52.0
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 1.4e-29 134.8 181 43.1
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.2e-29 133.7 285 32.6
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 4.6e-28 129.8 127 49.6
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 4.6e-28 129.8 127 49.6
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 4.1e-24 116.7 144 45.8
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 7.7e-23 112.5 82 67.1
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 2.9e-22 110.5 107 49.5
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 3.3e-18 97.1 242 31.8
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 1.8e-16 91.3 94 53.2
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.7e-06 58.2 52 53.8


User provided reference genes

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