Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0004s0230 Marchantia polymorpha HOM05D003003 ORTHO05D031171 9.1e-153 543.5 267 100.0
AagrBONN_evm.TU.Sc2ySwM_228.1890 Anthoceros agrestis HOM05D003003 ORTHO05D031171 6.2e-61 238.4 207 58.5
Pp3c22_4760 Physcomitrium patens HOM05D003003 ORTHO05D031171 4.2e-57 225.7 251 49.8
MCO05G678 Micromonas commoda HOM05D003003 ORTHO05D009423 3.1e-12 76.6 169 32.0
Pp3c3_11210 Physcomitrium patens HOM05D007521 ORTHO05D009387 6.5e-10 68.9 161 33.5
Sed0024487 Sechium edule HOM05D003003 ORTHO05D008343 6.5e-10 68.9 150 33.3
Cc06_g00240 Coffea canephora HOM05D003003 ORTHO05D008343 1.5e-09 67.8 150 30.0
MBI15_g27839_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D009423 1.5e-09 67.8 129 32.6
PGR004G0262 Punica granatum HOM05D003003 ORTHO05D008343 1.5e-09 67.8 162 28.4
TWI31G0124 Tripterygium wilfordii HOM05D003003 ORTHO05D009423 1.5e-09 67.8 182 30.2
unitig_27.g24893 Utricularia gibba HOM05D003003 ORTHO05D008343 1.5e-09 67.8 137 32.8
Pp3c8_3980 Physcomitrium patens HOM05D003003 ORTHO05D009423 2.5e-09 67.0 139 32.4
Duzib151G0009 Durio zibethinus HOM05D003003 ORTHO05D008343 3.2e-09 66.6 150 32.7
Lalb_Chr03g0043871 Lupinus albus HOM05D003003 ORTHO05D008343 4.2e-09 66.2 150 30.7
Sed0024788 Sechium edule HOM05D003003 ORTHO05D009423 4.2e-09 66.2 160 30.0
Thecc.04G148400 Theobroma cacao HOM05D003003 ORTHO05D008343 5.5e-09 65.9 150 32.0
ClCG04G006230 Citrullus lanatus HOM05D003003 ORTHO05D008343 7.2e-09 65.5 150 32.7
Migut.J00015 Erythranthe guttata HOM05D003003 ORTHO05D008343 7.2e-09 65.5 150 31.3
Migut.L01135 Erythranthe guttata HOM05D003003 ORTHO05D009423 7.2e-09 65.5 148 33.1
PSO017G5855 Papaver somniferum HOM05D003003 ORTHO05D009423 7.2e-09 65.5 128 33.6
PSO478G4957 Papaver somniferum HOM05D003003 ORTHO05D009423 9.4e-09 65.1 128 33.6
Psat0s871g0080 Pisum sativum HOM05D003003 ORTHO05D009423 9.4e-09 65.1 109 36.7
Solyc10g074910.2 Solanum lycopersicum HOM05D003003 ORTHO05D008343 9.4e-09 65.1 162 30.2
Sopen10g027400 Solanum pennellii HOM05D003003 ORTHO05D008343 9.4e-09 65.1 162 30.2
Aqoxy4G03302 Aquilegia oxysepala HOM05D003003 ORTHO05D008343 1.2e-08 64.7 134 29.1
Duzib268G0602 Durio zibethinus HOM05D003003 ORTHO05D009423 1.2e-08 64.7 136 29.4
HanXRQChr01g0000501 Helianthus annuus HOM05D003003 ORTHO05D008343 1.6e-08 64.3 166 30.1
Os08g0102000 Oryza sativa ssp. japonica HOM05D003003 ORTHO05D009423 1.6e-08 64.3 125 33.6
MELO3C012182.2 Cucumis melo HOM05D003003 ORTHO05D009423 2.1e-08 63.9 160 28.8
Lsat_1_v5_gn_8_123140 Lactuca sativa HOM05D003003 ORTHO05D008343 2.1e-08 63.9 150 28.0
ClCG05G023360 Citrullus lanatus HOM05D003003 ORTHO05D009423 2.7e-08 63.5 160 29.4
Duzib251G0003 Durio zibethinus HOM05D003003 ORTHO05D009423 2.7e-08 63.5 127 31.5
Peaxi162Scf00374g00029 Petunia axillaris HOM05D003003 ORTHO05D008343 2.7e-08 63.5 163 30.1
ATR1159G029 Amborella trichopoda HOM05D003003 ORTHO05D009423 3.6e-08 63.2 139 30.9
Thhalv10008844m.g Eutrema salsugineum HOM05D003003 ORTHO05D009423 3.6e-08 63.2 121 32.2
FAN14G2421 Fragaria x ananassa HOM05D003003 ORTHO05D008343 3.6e-08 63.2 134 31.3
Gohir.D02G106600 Gossypium hirsutum HOM05D003003 ORTHO05D008343 3.6e-08 63.2 150 30.0
Lj2g0011014 Lotus japonicus HOM05D003003 ORTHO05D009423 3.6e-08 63.2 150 30.7
Nitab4.5_0007589g0030 Nicotiana tabacum HOM05D003003 ORTHO05D008343 3.6e-08 63.2 150 30.7
C03p72590 Brassica napus HOM05D003003 ORTHO05D009423 4.7e-08 62.8 109 34.9
BolC3t19556H Brassica oleracea HOM05D003003 ORTHO05D009423 4.7e-08 62.8 109 34.9
CDE06G1541 Ceratophyllum demersum HOM05D003003 ORTHO05D008343 4.7e-08 62.8 152 30.9
COL.COLO4_27751 Corchorus olitorius HOM05D003003 ORTHO05D009423 4.7e-08 62.8 127 31.5
Nitab4.5_0001215g0150 Nicotiana tabacum HOM05D003003 ORTHO05D008343 4.7e-08 62.8 150 30.7
PSO170G6425 Papaver somniferum HOM05D003003 ORTHO05D008343 4.7e-08 62.8 163 29.4
Phvul.006G035000 Phaseolus vulgaris HOM05D003003 ORTHO05D009423 4.7e-08 62.8 128 34.4
Prupe.6G296900 Prunus persica HOM05D003003 ORTHO05D008343 4.7e-08 62.8 150 30.0
Sed0015775 Sechium edule HOM05D003003 ORTHO05D008343 4.7e-08 62.8 118 36.4
THA.LOC104821982 Tarenaya hassleriana HOM05D003003 ORTHO05D009423 4.7e-08 62.8 121 32.2
TPR.G24287 Trifolium pratense HOM05D003003 ORTHO05D008343 4.7e-08 62.8 150 30.0
Atru.chr8.74 Acer truncatum HOM05D003003 ORTHO05D008343 6.1e-08 62.4 134 31.3
AT1G26220 Arabidopsis thaliana HOM05D003003 ORTHO05D009423 6.1e-08 62.4 121 33.1
A08p27240 Brassica napus HOM05D003003 ORTHO05D009423 6.1e-08 62.4 109 34.9
BraA08t34669Z Brassica rapa HOM05D003003 ORTHO05D009423 6.1e-08 62.4 109 34.9
CsaV3_4G027340 Cucumis sativus L. HOM05D003003 ORTHO05D008343 6.1e-08 62.4 150 31.3
FvH4_6g09480 Fragaria vesca HOM05D003003 ORTHO05D008343 6.1e-08 62.4 134 30.6
Gohir.A02G089500 Gossypium hirsutum HOM05D003003 ORTHO05D008343 6.1e-08 62.4 150 30.7
Phvul.006G034800 Phaseolus vulgaris HOM05D003003 ORTHO05D009423 6.1e-08 62.4 162 29.6
Sabra04G0156600 Salix brachista HOM05D003003 ORTHO05D008343 6.1e-08 62.4 134 31.3
CiPaw.09G223200 Carya illinoinensis HOM05D003003 ORTHO05D008343 8.0e-08 62.0 150 30.0
CsaV3_5G033650 Cucumis sativus L. HOM05D003003 ORTHO05D009423 8.0e-08 62.0 136 29.4
ECA248G3306 Erigeron canadensis HOM05D003003 ORTHO05D008343 8.0e-08 62.0 144 30.6
Eucgr.B03096 Eucalyptus grandis HOM05D003003 ORTHO05D009423 8.0e-08 62.0 129 34.1
Glyma.09G272400 Glycine max HOM05D003003 ORTHO05D008343 8.0e-08 62.0 150 29.3
Mapoly0070s0078 Marchantia polymorpha HOM05D007521 ORTHO05D009387 8.0e-08 62.0 174 28.2
unitig_22.g6536 Utricularia gibba HOM05D003003 ORTHO05D009423 8.0e-08 62.0 132 31.8
CAN.G659.15 Capsicum annuum HOM05D003003 ORTHO05D008343 1.0e-07 61.6 162 29.6
CBR_g38036 Chara braunii HOM05D003003 ORTHO05D008343 1.0e-07 61.6 137 30.7
Eucgr.K01296 Eucalyptus grandis HOM05D003003 ORTHO05D008343 1.0e-07 61.6 199 27.1
Gorai.005G121100 Gossypium raimondii HOM05D003003 ORTHO05D008343 1.0e-07 61.6 134 30.6
Lj1g0019401 Lotus japonicus HOM05D003003 ORTHO05D008343 1.0e-07 61.6 134 30.6
Thecc.02G318100 Theobroma cacao HOM05D003003 ORTHO05D009423 1.0e-07 61.6 127 31.5
CSS0035077 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D009423 1.4e-07 61.2 130 31.5
Carub.0001s2474 Capsella rubella HOM05D003003 ORTHO05D009423 1.4e-07 61.2 121 32.2
Ca_07787_v3 Cicer arietinum L. HOM05D003003 ORTHO05D008343 1.4e-07 61.2 134 29.9
Ciclev10012371m.g Citrus clementina HOM05D003003 ORTHO05D008343 1.4e-07 61.2 152 31.6
Manes.08G168900 Manihot esculenta HOM05D003003 ORTHO05D008343 1.4e-07 61.2 131 31.3
Manes.13G005500 Manihot esculenta HOM05D003003 ORTHO05D009423 1.4e-07 61.2 136 29.4
PRCOL_00006563 Prasinoderma coloniale HOM05D003003 ORTHO05D333821 1.4e-07 61.2 138 29.0
Prupe.6G297300 Prunus persica HOM05D003003 ORTHO05D008343 1.4e-07 61.2 160 28.1
TAR622G0557 Trochodendron aralioides HOM05D003003 ORTHO05D009423 1.4e-07 61.2 130 31.5
AL1G39510 Arabidopsis lyrata HOM05D003003 ORTHO05D009423 1.8e-07 60.8 121 32.2
arahy.Tifrunner.gnm1.ann1.7LY3NN Arachis hypogaea HOM05D003003 ORTHO05D008343 1.8e-07 60.8 150 29.3
arahy.Tifrunner.gnm1.ann1.NKAS4C Arachis hypogaea HOM05D003003 ORTHO05D008343 1.8e-07 60.8 150 29.3
arahy.Tifrunner.gnm1.ann1.V4D1ZF Arachis hypogaea HOM05D003003 ORTHO05D008343 1.8e-07 60.8 150 29.3
CSS0014362 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D008343 1.8e-07 60.8 158 31.0
Cpa.g.sc53.6 Carica papaya HOM05D003003 ORTHO05D009423 1.8e-07 60.8 127 31.5
Lsat_1_v5_gn_4_162180 Lactuca sativa HOM05D003003 ORTHO05D009423 1.8e-07 60.8 136 29.4
Lsat_1_v5_gn_8_11100 Lactuca sativa HOM05D007521 ORTHO05D009387 1.8e-07 60.8 200 31.5
PSO017G2464 Papaver somniferum HOM05D003003 ORTHO05D008343 1.8e-07 60.8 156 28.2
VMungo0540G0138 Vigna mungo HOM05D003003 ORTHO05D009423 1.8e-07 60.8 129 32.6
Actinidia31757 Actinidia chinensis HOM05D007521 ORTHO05D009387 2.3e-07 60.5 155 31.6
Aa31LG2G13930 Aethionema arabicum HOM05D003003 ORTHO05D008343 2.3e-07 60.5 139 30.2
CARHR025690 Cardamine hirsuta HOM05D003003 ORTHO05D009423 2.3e-07 60.5 121 32.2
Cre01.g002250 Chlamydomonas reinhardtii HOM05D003003 ORTHO05D009423 2.3e-07 60.5 137 27.7
MD12G1192400 Malus domestica HOM05D003003 ORTHO05D008343 2.3e-07 60.5 134 29.9
Phvul.008G079900 Phaseolus vulgaris HOM05D003003 ORTHO05D008343 2.3e-07 60.5 150 28.0
Aqoxy3G00590 Aquilegia oxysepala HOM05D003003 ORTHO05D009423 3.0e-07 60.1 128 29.7
Nn4g23601 Nelumbo nucifera HOM05D003003 ORTHO05D009423 3.0e-07 60.1 132 29.5
EL10Ac6g14605 Beta vulgaris HOM05D003003 ORTHO05D009423 4.0e-07 59.7 121 33.1
Cfa017002 Carpinus fangiana HOM05D003003 ORTHO05D008343 4.0e-07 59.7 118 33.9
Ca_05157_v3 Cicer arietinum L. HOM05D003003 ORTHO05D009423 4.0e-07 59.7 109 34.9
Ciclev10032841m.g Citrus clementina HOM05D003003 ORTHO05D009423 4.0e-07 59.7 136 27.9
Glyma.18G216900 Glycine max HOM05D003003 ORTHO05D008343 4.0e-07 59.7 134 30.6
Hma1.2p1_0174F.1_g076680 Hydrangea macrophylla HOM05D003003 ORTHO05D008343 4.0e-07 59.7 134 30.6
Medtr7g073990 Medicago truncatula HOM05D003003 ORTHO05D008343 4.0e-07 59.7 150 28.7
SGA_v2.0_scaffold2144G54083 Striga asiatica HOM05D003003 ORTHO05D008343 4.0e-07 59.7 132 31.8
HPP92_005299 Vanilla planifolia HOM05D003003 ORTHO05D009423 4.0e-07 59.7 139 30.2
Aa31LG7G8770 Aethionema arabicum HOM05D003003 ORTHO05D009423 5.2e-07 59.3 121 31.4
AT1G32070 Arabidopsis thaliana HOM05D003003 ORTHO05D008343 5.2e-07 59.3 146 30.8
EL10Ac7g17135 Beta vulgaris HOM05D003003 ORTHO05D008343 5.2e-07 59.3 151 29.8
Glyma.02G126500 Glycine max HOM05D003003 ORTHO05D009423 5.2e-07 59.3 120 33.3
QL07p031603 Quercus lobata HOM05D003003 ORTHO05D008343 5.2e-07 59.3 165 27.9
unitig_37.g11916 Utricularia gibba HOM05D007521 ORTHO05D009387 5.2e-07 59.3 165 29.7
VMungo1383G2339 Vigna mungo HOM05D003003 ORTHO05D008343 5.2e-07 59.3 134 29.1
Ciclev10033598m.g Citrus clementina HOM05D007521 ORTHO05D009387 6.8e-07 58.9 199 30.2
Gohir.A13G092700 Gossypium hirsutum HOM05D003003 ORTHO05D009423 6.8e-07 58.9 127 30.7
PGR102G0555 Punica granatum HOM05D003003 ORTHO05D009423 6.8e-07 58.9 162 27.2
Hund19741 Selenicereus undatus HOM05D003003 ORTHO05D008343 6.8e-07 58.9 150 28.7
THA.LOC104806235 Tarenaya hassleriana HOM05D003003 ORTHO05D008343 6.8e-07 58.9 221 26.7
vmacro20392 Vaccinium macrocarpon HOM05D003003 ORTHO05D008343 6.8e-07 58.9 134 32.8
AagrBONN_evm.TU.Sc2ySwM_368.1216 Anthoceros agrestis HOM05D003003 ORTHO05D009423 8.8e-07 58.5 137 33.6
Carub.0001s3039 Capsella rubella HOM05D003003 ORTHO05D008343 8.8e-07 58.5 144 30.6
Dinv16947 Davidia involucrata HOM05D003003 ORTHO05D008343 8.8e-07 58.5 133 29.3
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 8.8e-07 58.5 134 30.6
AUR62007827 Chenopodium quinoa HOM05D003003 ORTHO05D009423 1.2e-06 58.2 109 32.1
DCAR_030065 Daucus carota HOM05D003003 ORTHO05D009423 1.2e-06 58.2 125 32.0
SEGI_32854 Sequoiadendron giganteum HOM05D003003 ORTHO05D008343 1.2e-06 58.2 126 30.2
DCAR_023966 Daucus carota HOM05D003003 ORTHO05D008343 1.5e-06 57.8 134 29.1
Gohir.D13G090000 Gossypium hirsutum HOM05D003003 ORTHO05D009423 1.5e-06 57.8 127 29.9
Gorai.013G103300 Gossypium raimondii HOM05D003003 ORTHO05D009423 1.5e-06 57.8 127 29.9
Lj2A56T95 Lonicera japonica HOM05D003003 ORTHO05D008343 1.5e-06 57.8 105 34.3
SGA_v2.0_scaffold36G14500 Striga asiatica HOM05D003003 ORTHO05D009423 1.5e-06 57.8 109 33.9
ATR1127G143 Amborella trichopoda HOM05D003003 ORTHO05D008343 2.0e-06 57.4 161 28.6
CANSAT21G0154 Cannabis sativa HOM05D003003 ORTHO05D008343 2.0e-06 57.4 150 28.7
Haze_11835 Corylus avellana HOM05D003003 ORTHO05D009423 2.6e-06 57.0 136 26.5
ECA232G0560 Erigeron canadensis HOM05D003003 ORTHO05D009423 2.6e-06 57.0 136 27.9
Lalb_Chr17g0341641 Lupinus albus HOM05D003003 ORTHO05D009423 2.6e-06 57.0 155 27.1
Pp3c11_26820 Physcomitrium patens HOM05D003003 ORTHO05D008343 2.6e-06 57.0 129 28.7
Rhsim05G0233000 Rhododendron simsii HOM05D003003 ORTHO05D008343 2.6e-06 57.0 157 31.8
Medtr1g018030 Medicago truncatula HOM05D003003 ORTHO05D009423 3.4e-06 56.6 109 31.2
Sc08g0005600 Simmondsia chinensis HOM05D003003 ORTHO05D009423 3.4e-06 56.6 146 29.5
PGSC0003DMG400011658 Solanum tuberosum HOM05D007521 ORTHO05D009387 3.4e-06 56.6 142 31.7
TPR.G2655 Trifolium pratense HOM05D003003 ORTHO05D009423 3.4e-06 56.6 109 34.9
BcaB03g13769 Brassica carinata HOM05D003003 ORTHO05D008343 4.4e-06 56.2 142 28.9
Nn2g10236 Nelumbo nucifera HOM05D003003 ORTHO05D008343 4.4e-06 56.2 101 34.7
Potri.008G113600 Populus trichocarpa HOM05D003003 ORTHO05D009423 4.4e-06 56.2 127 29.1
Prupe.1G298700 Prunus persica HOM05D003003 ORTHO05D009423 4.4e-06 56.2 109 32.1
SMO230G0119 Selaginella moellendorffii HOM05D003003 ORTHO05D008343 4.4e-06 56.2 127 29.9
GSVIVG01029873001 Vitis vinifera HOM05D003003 ORTHO05D008343 4.4e-06 56.2 134 30.6
CiPaw.05G119600 Carya illinoinensis HOM05D003003 ORTHO05D009423 5.7e-06 55.8 128 29.7
Haze_21204 Corylus avellana HOM05D003003 ORTHO05D008343 5.7e-06 55.8 109 31.2
HanXRQChr08g0223011 Helianthus annuus HOM05D007521 ORTHO05D009387 5.7e-06 55.8 179 30.2
HanXRQChr15g0465161 Helianthus annuus HOM05D003003 ORTHO05D009423 5.7e-06 55.8 156 27.6
MD13G1053400 Malus domestica HOM05D003003 ORTHO05D009423 5.7e-06 55.8 109 31.2
QL08p047838 Quercus lobata HOM05D003003 ORTHO05D009423 5.7e-06 55.8 128 29.7
Sabra08G0085900 Salix brachista HOM05D003003 ORTHO05D009423 5.7e-06 55.8 127 29.1
SMO133G0004 Selaginella moellendorffii HOM05D003003 ORTHO05D009423 5.7e-06 55.8 128 28.1
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 5.7e-06 55.8 171 29.8
Ah.03g139670 Amaranthus hybridus HOM05D003003 ORTHO05D009423 7.5e-06 55.5 109 33.9
SalBow8G0083 Salvia bowleyana HOM05D003003 ORTHO05D009423 7.5e-06 55.5 120 30.0
SalBow8G1330 Salvia bowleyana HOM05D003003 ORTHO05D009423 7.5e-06 55.5 120 30.0
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 7.5e-06 55.5 220 30.9
AUR62006445 Chenopodium quinoa HOM05D003003 ORTHO05D008343 9.8e-06 55.1 132 31.8
Cc11_g11250 Coffea canephora HOM05D003003 ORTHO05D009423 9.8e-06 55.1 109 33.9
Dinv15558 Davidia involucrata HOM05D003003 ORTHO05D009423 9.8e-06 55.1 109 32.1
FvH4_4g28730 Fragaria vesca HOM05D003003 ORTHO05D009423 9.8e-06 55.1 127 30.7
FAN07G2271 Fragaria x ananassa HOM05D003003 ORTHO05D009423 9.8e-06 55.1 127 30.7
FAN12G0971 Fragaria x ananassa HOM05D003003 ORTHO05D009423 9.8e-06 55.1 127 30.7
FAN17G1234 Fragaria x ananassa HOM05D003003 ORTHO05D009423 9.8e-06 55.1 127 30.7
FAN22G2066 Fragaria x ananassa HOM05D003003 ORTHO05D009423 9.8e-06 55.1 127 30.7
Sp1g27730 Schrenkiella parvula HOM05D003003 ORTHO05D008343 9.8e-06 55.1 142 27.5
TAR633G0041 Trochodendron aralioides HOM05D003003 ORTHO05D008343 9.8e-06 55.1 102 34.3


User provided reference genes

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