Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 7.7e-233 810.1 394 100.0
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 3.8e-147 525.4 385 66.5
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 9.3e-146 520.8 327 73.7
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.2e-140 503.8 301 76.7
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.8e-131 472.2 378 61.4
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 6.5e-131 471.5 314 71.0
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 3.2e-130 469.2 341 64.5
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 2.1e-129 466.5 339 64.9
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.1e-129 466.5 313 68.7
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 3.5e-129 465.7 357 61.3
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 3.5e-129 465.7 341 63.6
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 1.3e-128 463.8 347 64.3
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 2.3e-128 463.0 351 62.7
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 3.0e-128 462.6 344 65.1
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 5.1e-128 461.8 329 64.1
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.1e-128 461.8 329 64.1
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.1e-127 460.7 329 65.0
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 7.4e-127 458.0 350 62.0
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 7.4e-127 458.0 341 63.6
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 7.4e-127 458.0 329 63.5
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 9.7e-127 457.6 350 62.0
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 1.3e-126 457.2 341 62.2
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.3e-126 457.2 304 69.1
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 1.6e-126 456.8 343 63.3
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 1.6e-126 456.8 344 63.7
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.6e-126 456.8 350 62.0
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 2.8e-126 456.1 344 63.4
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 2.8e-126 456.1 341 63.6
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 2.8e-126 456.1 317 65.6
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 3.7e-126 455.7 372 59.7
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 6.3e-126 454.9 374 61.2
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 1.1e-125 454.1 344 62.2
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.4e-125 453.8 350 61.7
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.8e-125 453.4 341 61.9
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 2.4e-125 453.0 358 61.2
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 3.1e-125 452.6 341 61.9
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 3.1e-125 452.6 313 66.1
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 4.1e-125 452.2 360 60.6
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 5.3e-125 451.8 313 65.5
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 9.0e-125 451.1 344 62.8
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.5e-124 450.3 371 59.8
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.5e-124 450.3 341 61.9
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 2.0e-124 449.9 341 61.3
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 2.6e-124 449.5 341 62.5
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 3.4e-124 449.1 341 62.2
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 3.4e-124 449.1 348 60.9
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.4e-124 449.1 354 60.7
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 3.4e-124 449.1 341 61.9
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 3.4e-124 449.1 342 62.0
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 4.5e-124 448.7 395 56.5
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 4.5e-124 448.7 304 67.4
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 4.5e-124 448.7 341 61.0
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 4.5e-124 448.7 341 61.6
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 5.9e-124 448.4 383 58.0
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 7.6e-124 448.0 345 61.2
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 1.0e-123 447.6 341 62.8
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 1.3e-123 447.2 395 55.9
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 1.7e-123 446.8 342 61.7
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 1.7e-123 446.8 341 61.9
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 2.9e-123 446.0 313 64.5
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 5.0e-123 445.3 391 56.3
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 6.5e-123 444.9 347 60.8
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 6.5e-123 444.9 301 67.8
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 6.5e-123 444.9 329 60.8
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 6.5e-123 444.9 298 68.5
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 8.5e-123 444.5 381 58.0
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 8.5e-123 444.5 381 58.0
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 1.4e-122 443.7 341 61.3
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 1.9e-122 443.4 311 66.2
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 1.9e-122 443.4 341 61.3
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 1.9e-122 443.4 341 61.3
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.9e-122 443.4 335 63.3
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.9e-122 443.4 344 63.4
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 2.5e-122 443.0 381 58.3
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 4.2e-122 442.2 341 61.6
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 5.5e-122 441.8 311 64.0
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 7.2e-122 441.4 384 57.6
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 7.2e-122 441.4 364 60.7
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 9.3e-122 441.0 381 57.7
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 9.3e-122 441.0 384 56.8
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 9.3e-122 441.0 342 60.8
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.2e-121 440.7 350 59.4
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.6e-121 440.3 389 56.8
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.6e-121 440.3 357 57.7
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 1.6e-121 440.3 298 67.4
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 2.1e-121 439.9 341 61.6
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 2.1e-121 439.9 313 63.3
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 2.1e-121 439.9 357 57.4
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 3.6e-121 439.1 341 61.0
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 7.9e-121 438.0 384 57.0
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 7.9e-121 438.0 342 61.1
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 7.9e-121 438.0 342 59.9
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 1.3e-120 437.2 317 64.0
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.3e-120 436.4 310 65.5
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 2.3e-120 436.4 313 62.0
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 3.0e-120 436.0 313 63.3
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 3.0e-120 436.0 356 59.8
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 3.9e-120 435.6 311 63.0
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 1.5e-119 433.7 364 58.2
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 1.9e-119 433.3 343 59.5
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.9e-119 433.3 341 60.1
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 3.3e-119 432.6 342 60.8
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 5.7e-119 431.8 361 58.4
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 2.2e-118 429.9 312 62.2
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.8e-118 429.5 360 58.9
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.8e-118 429.5 360 58.9
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 4.8e-118 428.7 311 64.0
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 8.2e-118 427.9 315 65.7
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 8.2e-118 427.9 304 63.5
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.1e-117 427.6 314 65.6
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 1.8e-117 426.8 336 63.4
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 2.4e-117 426.4 361 58.2
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 5.3e-117 425.2 342 58.8
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 1.0e-115 421.0 342 57.0
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 1.0e-115 421.0 342 59.1
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.0e-115 421.0 341 60.4
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 1.0e-115 421.0 336 62.5
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 2.9e-115 419.5 341 59.5
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 9.4e-114 414.5 309 61.8
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 1.6e-113 413.7 350 59.1
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 4.7e-113 412.1 322 61.5
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 2.0e-111 406.8 339 56.9
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.8e-110 402.1 332 58.4
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 7.2e-106 388.3 314 59.2
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 2.6e-103 379.8 395 48.9
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.1e-101 372.9 232 71.1
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 9.1e-101 371.3 310 58.1
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.8e-94 349.7 305 57.0
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 6.3e-94 348.6 313 55.6
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.1e-93 346.3 276 59.1
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.8e-91 339.3 228 67.1
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 2.7e-89 333.2 206 73.8
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.1e-89 332.0 196 76.0
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.1e-85 321.2 400 42.2
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 1.1e-85 321.2 196 72.4
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.6e-81 307.4 342 49.1
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 7.8e-76 288.5 219 62.6
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 2.9e-75 286.6 179 73.2
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 4.7e-73 279.3 229 59.0
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 1.4e-72 277.7 301 44.9
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 8.9e-72 275.0 343 42.9
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 1.1e-66 258.1 295 43.7
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 9.8e-63 245.0 228 54.4
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 3.6e-57 226.5 221 51.6
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 3.4e-55 219.9 222 49.5
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 3.4e-55 219.9 359 38.2
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 6.6e-51 205.7 207 49.3
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.6e-41 174.5 124 68.5
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 8.7e-35 152.1 146 48.6
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.8e-30 136.7 147 50.3
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.5e-23 113.2 64 78.1
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 2.7e-20 104.0 102 46.1
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 1.1e-18 98.6 57 70.2
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.5e-18 97.4 91 50.5


User provided reference genes

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