Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 3.0e-248 861.3 413 100.0
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 4.7e-108 395.6 339 59.3
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 8.9e-99 364.8 262 63.4
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.5e-93 347.4 325 54.8
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 2.5e-93 346.7 325 54.2
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 7.3e-93 345.1 322 56.2
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 9.6e-93 344.7 273 59.7
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 2.8e-92 343.2 320 54.1
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 6.2e-92 342.0 311 54.7
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 8.1e-92 341.7 329 52.0
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 1.8e-91 340.5 330 52.4
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 2.4e-91 340.1 323 54.2
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 3.1e-91 339.7 259 60.2
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 8.9e-91 338.2 272 59.6
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 8.9e-91 338.2 259 60.6
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 8.9e-91 338.2 259 60.6
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 1.2e-90 337.8 323 54.8
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 2.0e-90 337.0 324 52.2
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 2.0e-90 337.0 340 51.5
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.0e-90 337.0 259 60.2
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 2.6e-90 336.7 334 52.1
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 4.4e-90 335.9 311 52.7
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 9.9e-90 334.7 339 51.0
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 1.7e-89 334.0 334 51.2
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.7e-89 334.0 334 51.2
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 1.7e-89 334.0 337 51.0
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 1.7e-89 334.0 332 50.6
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 8.4e-89 331.6 337 50.7
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 1.1e-88 331.3 257 59.9
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 1.9e-88 330.5 279 55.2
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 3.2e-88 329.7 324 51.9
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 3.2e-88 329.7 332 51.5
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 3.2e-88 329.7 333 51.7
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 7.1e-88 328.6 257 59.5
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 7.1e-88 328.6 336 50.6
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 2.7e-87 326.6 329 52.0
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 4.6e-87 325.9 311 52.1
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 7.8e-87 325.1 339 49.3
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 1.0e-86 324.7 274 57.3
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 1.3e-86 324.3 311 51.4
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 1.7e-86 323.9 261 58.2
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 2.3e-86 323.6 332 51.5
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 5.1e-86 322.4 337 50.1
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 6.6e-86 322.0 298 54.4
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 6.6e-86 322.0 265 57.0
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 8.7e-86 321.6 332 51.2
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 1.5e-85 320.9 328 50.6
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 1.5e-85 320.9 257 57.6
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 1.5e-85 320.9 333 49.5
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.5e-85 320.1 259 60.2
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.5e-85 320.1 257 60.7
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 2.5e-85 320.1 322 50.9
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 3.3e-85 319.7 261 56.7
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 5.6e-85 318.9 259 57.5
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 9.6e-85 318.2 320 51.9
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.3e-84 317.8 329 50.8
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 1.3e-84 317.8 257 59.5
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 1.6e-84 317.4 274 55.8
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 1.4e-83 314.3 342 49.4
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 3.1e-83 313.2 259 57.5
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 4.0e-83 312.8 272 57.0
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 4.0e-83 312.8 265 58.1
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 5.3e-83 312.4 265 58.1
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 9.0e-83 311.6 322 50.6
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 1.5e-82 310.8 337 49.0
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 1.5e-82 310.8 328 49.1
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 2.6e-82 310.1 259 56.4
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 2.6e-82 310.1 333 48.0
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 2.6e-82 310.1 328 49.4
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 4.5e-82 309.3 343 47.2
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 5.8e-82 308.9 344 48.0
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 7.6e-82 308.5 305 49.5
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 9.9e-82 308.1 342 48.0
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.1e-80 304.7 289 54.7
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 1.4e-80 304.3 259 54.8
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 1.4e-80 304.3 267 57.3
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 5.4e-80 302.4 257 56.8
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 9.3e-80 301.6 344 46.5
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 1.2e-79 301.2 233 60.9
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 1.2e-79 301.2 259 54.8
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 1.6e-79 300.8 342 46.2
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 3.5e-79 299.7 258 56.2
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 3.5e-79 299.7 341 47.2
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 6.0e-79 298.9 279 53.4
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 7.9e-79 298.5 370 44.9
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 6.6e-78 295.4 322 47.2
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 2.1e-76 290.4 320 45.3
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 6.9e-75 285.4 325 45.8
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 9.0e-75 285.0 321 46.1
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 9.0e-75 285.0 329 45.3
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 2.6e-74 283.5 312 46.8
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 4.5e-74 282.7 261 51.3
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 7.6e-74 282.0 299 50.5
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 6.4e-73 278.9 339 44.5
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 1.1e-72 278.1 321 44.5
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 4.2e-72 276.2 267 52.8
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 1.3e-70 271.2 322 45.3
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 5.1e-70 269.2 216 56.5
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 1.5e-69 267.7 236 54.2
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 1.9e-69 267.3 223 55.2
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 4.8e-68 262.7 209 58.9
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 8.1e-68 261.9 318 42.5
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.4e-67 261.2 232 52.2
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 4.5e-66 256.1 343 43.7
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 5.8e-66 255.8 320 43.4
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 1.9e-64 250.8 318 41.8
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 2.5e-64 250.4 316 42.4
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 2.5e-64 250.4 316 42.4
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 1.6e-63 247.7 316 42.1
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 2.1e-63 247.3 316 42.1
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 7.9e-63 245.4 317 42.0
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.8e-62 244.2 291 45.4
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.3e-62 243.8 347 40.3
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 1.1e-61 241.5 317 40.7
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 4.3e-61 239.6 316 41.5
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 1.6e-60 237.7 316 40.2
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 6.3e-60 235.7 192 58.9
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.8e-59 234.2 181 60.8
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 2.6e-58 230.3 186 58.1
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 3.4e-58 229.9 175 60.6
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.8e-52 210.3 161 59.6
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 6.3e-52 209.1 154 57.8
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 3.4e-42 176.8 155 55.5
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 9.4e-40 168.7 329 35.9
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.6e-39 167.9 157 50.3
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 3.8e-33 146.7 175 46.9
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.6e-31 140.2 105 56.2
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 6.3e-28 129.4 122 44.3
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.1e-23 114.4 80 57.5
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.8e-20 104.0 101 52.5
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 8.3e-20 102.4 119 40.3
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 8.5e-17 92.4 55 67.3
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 4.4e-13 80.1 372 21.5
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 3.7e-12 77.0 68 55.9
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 1.6e-10 71.6 117 39.3
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.7e-10 70.9 111 40.5
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 2.5e-08 64.3 53 56.6
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 7.3e-08 62.8 55 58.2
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 3.6e-07 60.5 51 45.1
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.8e-06 58.2 45 55.6


User provided reference genes

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