Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 2.1e-183 645.6 334 100.0
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 8.5e-100 367.9 294 67.0
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 9.1e-94 347.8 256 67.2
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 5.0e-92 342.0 247 66.4
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 1.3e-87 327.4 245 64.1
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 7.3e-83 311.6 262 61.5
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 3.6e-82 309.3 262 60.7
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 6.1e-82 308.5 268 60.4
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 8.0e-82 308.1 262 60.7
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 6.8e-81 305.1 273 56.8
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 1.5e-80 303.9 268 56.7
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 2.6e-80 303.1 275 56.0
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 3.4e-80 302.8 264 58.7
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 1.3e-79 300.8 260 57.7
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 1.7e-79 300.4 273 54.9
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 2.2e-79 300.1 268 57.8
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 2.2e-79 300.1 276 56.5
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.2e-79 300.1 292 53.1
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 2.9e-79 299.7 258 57.0
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 2.9e-79 299.7 262 56.5
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 3.7e-79 299.3 240 61.2
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 3.7e-79 299.3 280 55.0
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 3.7e-79 299.3 272 57.0
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 4.9e-79 298.9 287 54.0
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 6.4e-79 298.5 260 57.3
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 6.4e-79 298.5 239 61.1
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.3e-79 298.1 257 58.8
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 8.3e-79 298.1 269 58.4
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 8.3e-79 298.1 257 57.6
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.1e-78 297.7 260 56.5
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.1e-78 297.7 260 56.5
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 1.4e-78 297.4 269 56.1
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 1.4e-78 297.4 240 60.8
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.8e-78 297.0 294 52.4
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 1.8e-78 297.0 257 58.0
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 2.4e-78 296.6 240 60.0
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 2.4e-78 296.6 260 56.9
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 3.2e-78 296.2 239 61.1
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 4.1e-78 295.8 262 56.9
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 5.4e-78 295.4 261 57.5
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 7.0e-78 295.0 242 58.7
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 9.2e-78 294.7 268 56.3
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 9.2e-78 294.7 273 54.2
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.2e-77 294.3 257 56.4
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.2e-77 294.3 280 55.0
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 2.0e-77 293.5 240 59.2
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 2.7e-77 293.1 261 56.7
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 3.5e-77 292.7 292 52.7
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 3.5e-77 292.7 284 53.5
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 4.6e-77 292.4 281 53.0
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 4.6e-77 292.4 257 54.9
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 5.9e-77 292.0 256 56.2
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 5.9e-77 292.0 273 54.9
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 5.9e-77 292.0 273 54.9
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 5.9e-77 292.0 257 56.8
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 7.8e-77 291.6 251 57.0
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 7.8e-77 291.6 260 55.4
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 7.8e-77 291.6 260 55.4
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.3e-76 290.8 268 56.3
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 1.7e-76 290.4 262 56.1
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 2.3e-76 290.0 240 61.2
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.3e-76 290.0 273 54.6
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 3.0e-76 289.7 297 51.5
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.0e-76 289.7 239 58.6
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 3.9e-76 289.3 281 52.7
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 3.9e-76 289.3 281 52.7
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 5.0e-76 288.9 261 55.9
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 6.6e-76 288.5 268 55.6
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 1.1e-75 287.7 260 55.0
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 2.5e-75 286.6 282 52.5
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 2.5e-75 286.6 282 52.5
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 2.5e-75 286.6 262 55.3
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 2.5e-75 286.6 267 53.2
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 2.5e-75 286.6 267 53.6
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 3.3e-75 286.2 238 59.2
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 3.3e-75 286.2 265 55.5
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 3.3e-75 286.2 239 58.2
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 4.3e-75 285.8 292 51.7
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 5.6e-75 285.4 277 52.7
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 5.6e-75 285.4 289 52.2
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 1.6e-74 283.9 240 57.1
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 1.6e-74 283.9 240 57.1
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 1.6e-74 283.9 240 57.1
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.6e-74 283.9 263 52.1
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 2.1e-74 283.5 257 55.3
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.8e-74 283.1 274 53.6
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 3.6e-74 282.7 292 51.0
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 3.6e-74 282.7 276 52.5
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 4.7e-74 282.3 250 57.2
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 6.2e-74 282.0 280 52.1
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 6.2e-74 282.0 276 54.3
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.0e-74 281.6 257 54.5
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 1.0e-73 281.2 270 53.3
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.0e-73 281.2 276 51.8
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 1.4e-73 280.8 261 53.6
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 2.3e-73 280.0 268 57.1
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 2.3e-73 280.0 228 60.1
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 2.3e-73 280.0 228 60.1
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 4.0e-73 279.3 258 55.4
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 4.0e-73 279.3 273 52.0
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 8.9e-73 278.1 296 50.7
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.2e-72 277.7 261 54.0
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 1.2e-72 277.7 288 49.3
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 2.0e-72 276.9 286 51.7
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 9.8e-72 274.6 247 54.7
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 1.3e-71 274.2 281 50.9
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.1e-70 271.2 256 53.1
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 1.1e-70 271.2 217 59.4
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 2.4e-70 270.0 287 51.2
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 4.1e-70 269.2 217 58.1
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 2.7e-69 266.5 305 48.2
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 7.8e-69 265.0 241 54.4
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 1.7e-68 263.8 234 56.4
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 1.7e-68 263.8 254 53.1
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 1.2e-66 257.7 283 49.8
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 2.8e-66 256.5 237 56.1
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 6.2e-66 255.4 257 51.8
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 5.2e-65 252.3 262 50.0
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 8.9e-65 251.5 234 54.3
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 1.5e-64 250.8 272 49.3
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 1.5e-64 250.8 251 51.4
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 9.2e-62 241.5 260 48.5
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.1e-59 234.6 191 59.7
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 1.2e-58 231.1 250 48.8
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.2e-57 225.7 256 46.9
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 3.0e-52 209.9 213 49.8
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 1.2e-48 198.0 177 57.6
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 7.6e-48 195.3 180 53.9
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 9.9e-48 194.9 160 58.1
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 9.9e-48 194.9 142 66.9
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 1.3e-47 194.5 142 66.2
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 1.7e-47 194.1 317 42.6
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 3.2e-46 189.9 194 46.4
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 9.3e-46 188.3 142 62.0
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.5e-43 181.0 248 41.1
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 5.3e-41 172.6 249 39.0
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 9.9e-40 168.3 114 71.1
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 3.2e-38 163.3 124 64.5
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.9e-36 156.4 169 50.9
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 2.8e-34 150.2 275 39.6
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.8e-33 147.5 112 62.5
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 2.2e-31 140.6 128 50.0
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 7.6e-24 115.5 177 38.4
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 1.3e-23 114.8 126 49.2
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 9.3e-22 108.6 84 59.5
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 2.7e-21 107.1 88 58.0
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 2.7e-21 107.1 82 61.0
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.1e-17 93.6 67 62.7
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 2.6e-16 90.5 123 38.2
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 3.4e-16 90.1 270 24.8
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 5.9e-16 89.4 302 23.5
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 5.9e-16 89.4 269 26.0
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 2.5e-14 84.0 62 64.5
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 4.2e-14 83.2 49 83.7
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 7.4e-11 72.4 67 53.7
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 7.4e-11 72.4 151 27.2
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 1.6e-10 71.2 126 34.9
Pp3c25_12270 Physcomitrium patens HOM05D004215 ORTHO05D005293 4.1e-09 66.6 66 56.1
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 6.9e-09 65.9 155 32.9
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 7.7e-08 62.4 141 29.1
Carub.0001s1955 Capsella rubella HOM05D000565 ORTHO05D004389 7.2e-06 55.8 164 25.6
Thhalv10007988m.g Eutrema salsugineum HOM05D000565 ORTHO05D004389 7.2e-06 55.8 164 25.0


User provided reference genes

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