Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 5.0e-221 770.8 379 100.0
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 2.2e-83 313.5 374 44.7
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 2.4e-82 310.1 375 45.6
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 2.6e-81 306.6 374 45.7
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 5.9e-81 305.4 376 44.4
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 1.7e-80 303.9 376 43.9
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 2.2e-80 303.5 377 46.2
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 6.5e-80 302.0 375 46.4
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 8.5e-80 301.6 377 45.4
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 1.1e-79 301.2 378 44.2
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 1.1e-79 301.2 374 46.3
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 1.1e-79 301.2 374 44.9
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 1.5e-79 300.8 375 43.2
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 1.9e-79 300.4 378 45.2
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 3.2e-79 299.7 374 44.7
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 3.2e-79 299.7 379 44.6
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 4.2e-79 299.3 378 45.0
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 5.5e-79 298.9 375 45.9
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 5.5e-79 298.9 383 43.6
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 9.4e-79 298.1 376 43.4
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 9.4e-79 298.1 376 43.9
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.6e-78 297.4 375 42.9
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 2.1e-78 297.0 376 43.6
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.1e-78 297.0 375 42.9
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.1e-78 297.0 375 42.9
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.1e-78 297.0 375 42.9
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 2.1e-78 297.0 378 44.2
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 2.1e-78 297.0 376 43.9
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 2.7e-78 296.6 375 44.0
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 2.7e-78 296.6 375 43.7
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 3.6e-78 296.2 375 44.5
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 4.7e-78 295.8 375 42.7
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 4.7e-78 295.8 376 44.1
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 2.3e-77 293.5 382 42.4
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 3.0e-77 293.1 378 44.2
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 5.2e-77 292.4 376 44.7
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 6.7e-77 292.0 378 41.8
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 1.2e-76 291.2 376 43.9
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 1.2e-76 291.2 375 44.0
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 1.5e-76 290.8 377 43.0
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 2.0e-76 290.4 470 37.9
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 5.7e-76 288.9 375 42.1
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 1.3e-75 287.7 375 43.5
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 2.2e-75 287.0 380 45.0
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 2.8e-75 286.6 376 44.7
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 3.7e-75 286.2 375 42.1
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 3.7e-75 286.2 378 43.7
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 4.8e-75 285.8 377 42.4
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 8.2e-75 285.0 375 43.7
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 1.1e-74 284.6 379 43.8
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 1.1e-74 284.6 382 42.7
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 1.8e-74 283.9 378 42.1
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.1e-74 283.1 378 43.1
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 4.1e-74 282.7 375 42.7
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 4.1e-74 282.7 379 43.0
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 5.3e-74 282.3 376 44.1
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 7.0e-74 282.0 378 42.1
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 9.1e-74 281.6 387 39.3
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.6e-73 280.8 376 43.6
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 2.0e-73 280.4 382 42.1
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 2.7e-73 280.0 382 41.6
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 2.7e-73 280.0 375 43.5
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 3.5e-73 279.6 374 43.0
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 3.5e-73 279.6 383 41.3
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 4.5e-73 279.3 382 41.6
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 5.9e-73 278.9 377 42.2
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 7.7e-73 278.5 379 40.9
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 1.0e-72 278.1 365 44.1
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 1.0e-72 278.1 375 43.7
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 1.3e-72 277.7 377 42.7
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 1.3e-72 277.7 382 41.6
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.3e-72 277.7 378 43.9
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 1.3e-72 277.7 376 42.8
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 1.7e-72 277.3 379 41.2
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 1.7e-72 277.3 379 40.6
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 1.7e-72 277.3 379 41.2
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 1.7e-72 277.3 379 41.2
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 1.7e-72 277.3 392 42.3
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 5.0e-72 275.8 377 43.5
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 5.0e-72 275.8 376 43.4
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 1.1e-71 274.6 383 42.0
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.1e-71 274.6 376 43.6
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 1.5e-71 274.2 376 43.1
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 4.2e-71 272.7 371 41.8
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 9.4e-71 271.6 383 40.2
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 9.4e-71 271.6 381 43.3
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 1.6e-70 270.8 383 40.2
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 1.6e-70 270.8 377 42.7
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 3.6e-70 269.6 367 42.0
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 4.7e-70 269.2 383 40.5
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 6.1e-70 268.9 380 42.1
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.4e-69 267.7 385 39.7
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.2e-68 264.6 385 39.2
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 1.5e-68 264.2 386 39.4
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.0e-68 263.8 385 39.7
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 3.4e-68 263.1 375 41.9
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.3e-67 261.2 387 40.6
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.2e-67 260.4 387 40.3
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.8e-67 259.2 384 40.1
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 5.4e-66 255.8 382 38.5
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 5.4e-66 255.8 379 41.2
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 1.3e-64 251.1 377 40.3
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 1.3e-64 251.1 379 40.6
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 1.7e-64 250.8 376 39.9
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.7e-64 250.8 371 39.4
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 8.6e-64 248.4 385 39.5
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 3.3e-63 246.5 351 41.3
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 4.2e-63 246.1 351 41.3
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 5.5e-63 245.7 379 40.4
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.2e-60 238.0 380 39.2
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 3.7e-59 233.0 360 39.7
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 3.8e-56 223.0 392 36.0
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 1.4e-53 214.5 322 37.3
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 3.4e-52 209.9 246 42.7
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.3e-51 208.0 263 43.0
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 3.2e-50 203.4 266 41.0
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.5e-47 194.5 375 34.9
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 2.3e-45 187.2 359 36.2
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 1.2e-44 184.9 197 47.7
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 2.2e-43 180.6 359 32.0
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 6.2e-38 162.5 290 31.7
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 3.1e-37 160.2 240 40.4
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 3.7e-35 153.3 186 44.6
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 4.1e-34 149.8 197 39.1
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 3.2e-26 123.6 166 41.0
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.9e-23 114.4 128 42.2
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.5e-23 114.0 128 42.2
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 2.5e-23 114.0 168 43.5
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 1.6e-22 111.3 189 36.5
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 6.2e-22 109.4 286 27.6
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 9.9e-20 102.1 128 40.6
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 7.8e-17 92.4 263 32.3
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 3.0e-16 90.5 82 48.8
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 3.9e-16 90.1 82 48.8
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.1e-15 88.6 82 47.6
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 1.5e-15 88.2 107 43.0
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.3e-14 85.1 102 43.1
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 1.4e-13 81.6 96 46.9
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.0e-13 80.1 87 44.8
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 3.4e-12 77.0 68 50.0
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.7e-09 67.4 102 36.3
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.7e-09 67.4 102 36.3
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 1.3e-06 58.5 91 45.1


User provided reference genes

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