Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 0.0e+00 2791.1 1438 100.0
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 2.2e-80 305.4 441 42.4
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 5.2e-77 294.3 411 42.8
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 4.8e-75 287.7 339 50.4
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.4e-74 285.4 336 46.7
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 4.2e-71 274.6 435 42.8
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.6e-70 271.6 388 42.0
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 3.4e-68 265.0 279 53.4
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 9.8e-68 263.5 226 57.1
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 4.5e-65 254.6 326 47.2
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 5.9e-65 254.2 222 56.3
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 1.7e-64 252.7 364 40.7
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 6.5e-64 250.8 276 50.0
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 1.5e-63 249.6 231 55.4
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 1.5e-63 249.6 271 48.3
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 1.9e-63 249.2 300 46.0
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 1.9e-63 249.2 287 47.7
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 3.2e-63 248.4 284 48.2
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 4.2e-63 248.1 231 54.5
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 5.5e-63 247.7 336 42.6
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 7.2e-63 247.3 268 50.0
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 7.2e-63 247.3 271 48.0
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 2.7e-62 245.4 226 54.4
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 3.6e-62 245.0 261 51.0
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 1.0e-61 243.4 382 40.8
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 1.4e-61 243.0 321 45.5
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 1.8e-61 242.7 876 29.5
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 4.0e-61 241.5 257 50.6
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 5.2e-61 241.1 287 47.4
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 1.5e-60 239.6 281 47.0
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.5e-60 239.6 267 47.6
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 2.0e-60 239.2 248 48.4
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.6e-60 238.8 231 51.1
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 5.7e-60 237.7 263 49.4
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 7.5e-60 237.3 229 52.4
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 7.5e-60 237.3 283 46.6
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 9.8e-60 236.9 300 45.0
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 1.3e-59 236.5 279 47.7
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 1.3e-59 236.5 229 52.4
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.3e-59 236.5 281 45.6
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 1.3e-59 236.5 268 50.4
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 2.8e-59 235.3 222 54.1
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 3.7e-59 235.0 327 44.0
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 4.9e-59 234.6 268 48.1
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 6.3e-59 234.2 221 51.1
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 6.3e-59 234.2 256 47.7
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 1.1e-58 233.4 231 51.1
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 1.1e-58 233.4 321 44.5
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 1.4e-58 233.0 290 46.6
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 1.8e-58 232.6 316 44.0
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 5.4e-58 231.1 384 39.3
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 5.4e-58 231.1 334 42.2
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 9.1e-58 230.3 308 44.2
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 2.0e-57 229.2 293 46.8
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 3.5e-57 228.4 296 43.6
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 3.5e-57 228.4 250 50.4
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 4.5e-57 228.0 231 51.5
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 4.5e-57 228.0 280 46.4
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 5.9e-57 227.6 278 46.8
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 5.9e-57 227.6 267 46.4
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 7.7e-57 227.3 260 46.9
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 1.0e-56 226.9 224 51.8
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 1.3e-56 226.5 293 46.4
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.3e-56 226.5 296 43.2
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.7e-56 226.1 255 45.9
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 2.3e-56 225.7 310 43.5
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 2.9e-56 225.3 266 48.5
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 2.9e-56 225.3 336 41.7
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 2.9e-56 225.3 225 51.1
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 3.8e-56 224.9 203 54.2
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 3.8e-56 224.9 283 43.8
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 5.0e-56 224.6 315 42.2
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 5.0e-56 224.6 266 45.5
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 5.0e-56 224.6 272 45.6
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 8.6e-56 223.8 271 46.5
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 1.1e-55 223.4 313 42.5
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 1.5e-55 223.0 258 46.9
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 1.5e-55 223.0 264 46.6
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 5.5e-55 221.1 225 51.6
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 2.8e-54 218.8 274 43.1
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 3.6e-54 218.4 266 43.2
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 1.4e-53 216.5 285 46.0
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 1.4e-53 216.5 314 42.4
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 4.0e-53 214.9 215 52.6
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 5.2e-53 214.5 260 46.2
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 5.2e-53 214.5 224 50.9
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 8.9e-53 213.8 293 43.7
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 2.6e-52 212.2 283 45.6
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 3.4e-52 211.8 278 44.6
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 4.4e-52 211.5 231 48.9
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 7.5e-52 210.7 231 47.6
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 1.3e-51 209.9 291 41.2
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 1.3e-51 209.9 292 43.2
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 1.3e-51 209.9 264 41.7
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 2.2e-51 209.1 212 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 2.2e-51 209.1 915 28.0
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.9e-51 208.8 273 44.7
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 4.9e-51 208.0 372 37.6
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.9e-51 208.0 263 44.9
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 6.3e-51 207.6 202 50.0
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 8.3e-51 207.2 271 45.0
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 8.3e-51 207.2 205 50.2
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 8.3e-51 207.2 263 44.9
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 1.1e-50 206.8 417 36.0
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 1.8e-50 206.1 261 47.5
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.8e-50 206.1 281 45.2
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.4e-50 205.7 267 44.6
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 5.4e-50 204.5 352 37.5
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 5.4e-50 204.5 310 39.0
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 7.0e-50 204.1 218 51.4
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 9.2e-50 203.8 218 49.1
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 2.7e-49 202.2 202 49.0
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 2.7e-49 202.2 225 50.2
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 2.7e-49 202.2 231 47.6
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 3.5e-49 201.8 289 40.8
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 1.0e-48 200.3 263 44.1
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 1.3e-48 199.9 281 43.8
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 1.7e-48 199.5 218 48.6
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.3e-48 199.1 373 37.5
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.9e-48 198.7 439 33.7
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 3.9e-48 198.4 216 48.1
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 8.6e-48 197.2 234 44.0
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 8.6e-48 197.2 205 47.3
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 8.6e-48 197.2 200 49.0
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 8.6e-48 197.2 217 47.5
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 8.6e-48 197.2 367 34.9
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 2.5e-47 195.7 202 47.0
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 3.3e-47 195.3 216 48.1
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 4.3e-47 194.9 311 40.2
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 4.3e-47 194.9 312 41.0
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 5.6e-47 194.5 202 47.5
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 9.5e-47 193.7 200 48.0
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 9.5e-47 193.7 337 38.6
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 9.5e-47 193.7 395 34.4
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 1.6e-46 193.0 224 46.9
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 2.1e-46 192.6 200 47.5
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 2.1e-46 192.6 286 40.2
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 4.7e-46 191.4 249 45.4
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 6.1e-46 191.0 216 47.7
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 8.0e-46 190.7 203 45.8
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 1.4e-45 189.9 200 47.5
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 4.0e-45 188.3 200 47.5
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 2.2e-43 182.6 475 30.9
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 5.4e-42 177.9 200 44.5
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 5.4e-42 177.9 225 45.8
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 7.0e-42 177.6 264 40.5
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 9.2e-42 177.2 330 36.1
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.3e-40 173.3 258 41.5
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 6.6e-40 171.0 273 39.6
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.5e-39 169.9 299 35.8
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 3.6e-38 165.2 287 39.4
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 4.9e-35 154.8 188 44.7
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 1.7e-32 146.4 283 36.7
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 3.9e-32 145.2 276 36.6
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 2.8e-30 139.0 261 38.3
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 4.0e-29 135.2 142 50.7
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 8.6e-24 117.5 208 38.5
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.5e-23 116.7 144 46.5
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 2.1e-22 112.8 204 37.7
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 2.2e-19 102.8 505 27.7
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 8.4e-19 100.9 172 44.8
AagrBONN_evm.TU.Sc2ySwM_362.2615 Anthoceros agrestis HOM05D003626 ORTHO05D004255 4.6e-17 95.1 314 30.6
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 9.6e-15 87.4 135 40.0
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 2.6e-12 79.3 85 52.9
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 5.6e-07 61.6 78 50.0


User provided reference genes

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