Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.6e-68 261.9 134 100.0
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 4.4e-39 164.9 159 59.1
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 4.6e-20 101.7 116 47.4
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 3.6e-17 92.0 121 39.7
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 3.6e-17 92.0 123 39.8
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 4.7e-17 91.7 119 43.7
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 5.2e-16 88.2 124 40.3
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 6.8e-16 87.8 133 39.1
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.2e-15 87.0 119 42.0
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 1.5e-15 86.7 122 37.7
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.0e-15 86.3 122 38.5
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.6e-15 85.9 127 41.7
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 3.4e-15 85.5 121 38.8
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 4.4e-15 85.1 128 39.8
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 5.8e-15 84.7 122 37.7
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 5.8e-15 84.7 119 42.0
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 5.8e-15 84.7 119 42.0
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 7.6e-15 84.3 131 39.7
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 7.6e-15 84.3 121 38.8
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.7e-14 83.2 118 40.7
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.7e-14 83.2 118 40.7
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.2e-14 82.8 124 37.9
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 2.9e-14 82.4 123 37.4
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 2.9e-14 82.4 121 38.8
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.9e-14 82.4 118 39.8
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 2.9e-14 82.4 118 40.7
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 3.7e-14 82.0 119 39.5
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 4.9e-14 81.6 119 37.8
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 4.9e-14 81.6 121 40.5
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 4.9e-14 81.6 129 38.8
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 4.9e-14 81.6 121 39.7
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 6.4e-14 81.3 123 41.5
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 6.4e-14 81.3 123 38.2
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 8.4e-14 80.9 120 39.2
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 8.4e-14 80.9 132 37.1
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 8.4e-14 80.9 122 40.2
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 8.4e-14 80.9 122 40.2
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 8.4e-14 80.9 122 40.2
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 8.4e-14 80.9 118 41.5
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 8.4e-14 80.9 119 40.3
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 1.1e-13 80.5 123 38.2
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 1.1e-13 80.5 121 38.8
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 1.1e-13 80.5 119 37.8
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 1.1e-13 80.5 121 39.7
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 1.1e-13 80.5 128 35.9
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.4e-13 80.1 118 41.5
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.4e-13 80.1 118 39.0
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.4e-13 80.1 118 39.0
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.4e-13 80.1 95 45.3
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.4e-13 80.1 124 37.1
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 1.4e-13 80.1 121 38.0
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 1.4e-13 80.1 119 40.3
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 1.9e-13 79.7 118 39.0
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 1.9e-13 79.7 122 35.2
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.9e-13 79.7 118 39.0
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 1.9e-13 79.7 122 36.9
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 2.4e-13 79.3 127 36.2
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 2.4e-13 79.3 121 39.7
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 2.4e-13 79.3 122 34.4
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 2.4e-13 79.3 118 39.0
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 2.4e-13 79.3 121 39.7
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 2.4e-13 79.3 121 38.0
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 2.4e-13 79.3 118 41.5
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 3.2e-13 79.0 118 40.7
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 4.1e-13 78.6 128 35.9
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 4.1e-13 78.6 128 35.9
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 4.1e-13 78.6 128 36.7
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 4.1e-13 78.6 127 36.2
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 4.1e-13 78.6 118 38.1
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 4.1e-13 78.6 121 38.0
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 5.4e-13 78.2 121 37.2
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 5.4e-13 78.2 122 36.9
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.4e-13 78.2 118 39.0
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 5.4e-13 78.2 119 40.3
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 7.1e-13 77.8 121 38.0
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 7.1e-13 77.8 119 37.0
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 7.1e-13 77.8 119 37.0
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 7.1e-13 77.8 119 37.0
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 7.1e-13 77.8 119 37.0
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 7.1e-13 77.8 120 38.3
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 7.1e-13 77.8 119 36.1
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 9.2e-13 77.4 130 36.2
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 9.2e-13 77.4 122 36.9
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 9.2e-13 77.4 98 38.8
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 9.2e-13 77.4 119 37.0
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 9.2e-13 77.4 122 37.7
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 9.2e-13 77.4 121 37.2
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 1.2e-12 77.0 121 38.8
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 1.2e-12 77.0 128 35.2
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 1.2e-12 77.0 122 36.9
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.6e-12 76.6 98 39.8
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 1.6e-12 76.6 121 39.7
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 2.1e-12 76.3 128 35.9
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 2.7e-12 75.9 125 36.8
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 3.5e-12 75.5 124 37.1
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 3.5e-12 75.5 118 40.7
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 3.5e-12 75.5 119 38.7
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.5e-12 75.5 119 36.1
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 4.6e-12 75.1 119 37.0
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 4.6e-12 75.1 121 38.0
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 6.0e-12 74.7 123 37.4
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 7.8e-12 74.3 122 34.4
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 7.8e-12 74.3 122 36.1
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 7.8e-12 74.3 119 37.0
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 1.0e-11 73.9 119 37.8
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 1.0e-11 73.9 119 37.0
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 1.0e-11 73.9 122 36.1
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 1.0e-11 73.9 112 37.5
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.0e-11 73.9 121 38.0
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.3e-11 73.6 119 37.8
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.7e-11 73.2 122 36.9
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 1.7e-11 73.2 119 36.1
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.3e-11 72.8 119 37.8
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.3e-11 72.8 119 34.5
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 2.3e-11 72.8 122 35.2
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 2.3e-11 72.8 118 37.3
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 2.3e-11 72.8 127 33.9
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.0e-11 72.4 119 38.7
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.0e-11 72.4 100 41.0
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 3.0e-11 72.4 122 35.2
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 3.0e-11 72.4 130 33.8
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.9e-11 72.0 99 40.4
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.9e-11 72.0 99 40.4
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 3.9e-11 72.0 125 36.0
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 5.1e-11 71.6 120 35.8
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 5.1e-11 71.6 122 34.4
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 5.1e-11 71.6 98 40.8
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 5.1e-11 71.6 95 43.2
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 6.6e-11 71.2 124 33.9
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 8.6e-11 70.9 99 37.4
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 8.6e-11 70.9 118 35.6
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.1e-10 70.5 95 42.1
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.1e-10 70.5 127 33.1
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.5e-10 70.1 95 40.0
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 1.5e-10 70.1 93 40.9
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 2.5e-10 69.3 122 33.6
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 3.3e-10 68.9 103 36.9
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.3e-10 68.6 119 36.1
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 4.3e-10 68.6 88 43.2
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 4.3e-10 68.6 122 35.2
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.3e-10 68.6 136 33.8
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 4.3e-10 68.6 116 35.3
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 5.6e-10 68.2 124 34.7
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 7.3e-10 67.8 119 37.0
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 1.2e-09 67.0 95 38.9
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 1.6e-09 66.6 124 33.9
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 1.6e-09 66.6 124 33.9
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 1.6e-09 66.6 119 34.5
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.6e-09 66.6 122 37.7
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 3.6e-09 65.5 116 34.5
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 4.7e-09 65.1 118 31.4
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 6.2e-09 64.7 103 35.9
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.1e-08 63.9 95 36.8
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 9.9e-07 57.4 118 34.7


User provided reference genes

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