Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 0.0e+00 1080.1 527 100.0
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 1.7e-73 281.2 502 32.5
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 1.0e-70 271.9 474 33.1
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 1.3e-70 271.6 497 31.0
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.7e-70 271.2 473 33.6
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 6.5e-70 269.2 496 32.3
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 1.5e-69 268.1 500 32.4
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 1.9e-69 267.7 497 31.8
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 4.2e-69 266.5 510 30.6
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 1.2e-68 265.0 495 31.1
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 1.2e-68 265.0 511 32.1
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 4.7e-68 263.1 500 31.6
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 1.4e-67 261.5 524 32.4
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 1.8e-67 261.2 495 31.9
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 1.8e-67 261.2 504 30.6
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 1.8e-67 261.2 501 32.7
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 3.0e-67 260.4 497 30.6
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 4.0e-67 260.0 518 30.5
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 4.0e-67 260.0 499 31.1
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 4.0e-67 260.0 504 31.5
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 8.8e-67 258.8 502 31.5
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 1.1e-66 258.5 501 31.1
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 2.0e-66 257.7 498 30.1
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 4.4e-66 256.5 504 32.1
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 5.7e-66 256.1 493 31.4
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 1.3e-65 255.0 496 31.0
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 4.8e-65 253.1 502 31.7
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 6.3e-65 252.7 493 31.2
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 8.2e-65 252.3 495 31.3
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 1.4e-64 251.5 493 30.0
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 1.8e-64 251.1 495 30.7
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 2.4e-64 250.8 499 30.9
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 4.1e-64 250.0 514 30.0
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 4.1e-64 250.0 504 31.7
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 5.3e-64 249.6 498 31.7
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 9.1e-64 248.8 508 31.1
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 1.6e-63 248.1 510 30.0
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 2.6e-63 247.3 507 30.0
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.6e-63 247.3 499 31.7
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 4.5e-63 246.5 502 30.9
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 4.5e-63 246.5 455 31.2
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 5.9e-63 246.1 515 29.9
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 5.0e-62 243.0 503 30.2
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 1.1e-61 241.9 503 29.8
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 3.2e-61 240.4 512 30.9
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 4.2e-61 240.0 509 32.0
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 5.5e-61 239.6 498 30.9
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 9.4e-61 238.8 362 37.3
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 2.7e-60 237.3 490 29.8
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 8.0e-60 235.7 509 31.0
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 1.0e-59 235.3 359 35.9
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 1.4e-59 235.0 496 30.2
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 1.8e-59 234.6 518 29.9
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 1.8e-59 234.6 503 31.0
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 3.0e-59 233.8 525 29.9
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 4.0e-59 233.4 509 30.8
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 6.8e-59 232.6 509 30.3
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 2.0e-58 231.1 509 29.7
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 5.7e-58 229.6 519 29.7
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 5.7e-58 229.6 492 31.1
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 9.8e-58 228.8 514 30.0
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 9.8e-58 228.8 514 30.0
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 6.3e-57 226.1 572 27.6
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 1.1e-56 225.3 536 29.3
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 4.1e-56 223.4 520 29.6
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 4.1e-56 223.4 437 30.7
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.6e-55 221.5 345 34.5
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 1.0e-54 218.8 342 35.4
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 1.7e-54 218.0 350 35.4
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 8.5e-54 215.7 526 27.8
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 6.1e-52 209.5 366 33.6
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 8.0e-52 209.1 590 28.8
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 2.6e-50 204.1 357 33.1
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.3e-49 201.8 478 29.3
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 4.9e-49 199.9 458 27.9
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 1.2e-47 195.3 466 28.3
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 1.7e-46 191.4 435 27.6
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 1.6e-44 184.9 415 27.5
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 1.5e-42 178.3 440 28.0
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 2.9e-41 174.1 324 32.7
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 1.1e-40 172.2 513 27.7
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 5.4e-40 169.9 432 25.7
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 3.5e-39 167.2 354 30.2
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 3.5e-39 167.2 478 27.4
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 7.8e-39 166.0 469 26.4
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 1.3e-38 165.2 346 29.8
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 3.3e-37 160.6 419 26.7
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 3.2e-32 144.1 400 26.2
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 5.4e-32 143.3 277 32.1
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 9.2e-32 142.5 242 32.6
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 1.6e-31 141.7 211 36.5
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.6e-31 141.7 249 33.3
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 2.3e-30 137.9 201 35.8
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 3.0e-30 137.5 309 28.5
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 6.6e-30 136.3 249 30.5
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 6.6e-30 136.3 249 30.5
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 1.1e-29 135.6 224 33.9
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 1.2e-28 132.1 185 34.6
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 6.2e-28 129.8 223 33.2
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 1.2e-26 125.6 188 35.1
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 4.4e-26 123.6 229 32.8
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 1.7e-25 121.7 205 33.7
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 2.9e-25 120.9 201 31.3
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 6.4e-25 119.8 240 30.4
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 1.9e-24 118.2 309 27.5
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 3.9e-22 110.5 162 34.0
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 1.9e-21 108.2 112 42.9
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 1.6e-20 105.1 174 33.9
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 1.4e-19 102.1 174 33.3
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 2.3e-19 101.3 116 41.4
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 8.4e-17 92.8 74 54.1
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 5.4e-16 90.1 346 23.1
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 1.0e-14 85.9 74 52.7
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 4.0e-11 73.9 66 48.5
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 1.7e-09 68.6 60 46.7
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 1.0e-06 59.3 37 64.9
AL2G13780 Arabidopsis lyrata HOM05D000147 ORTHO05D001254 8.7e-06 56.2 156 26.3


User provided reference genes

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