Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0003s0148 Marchantia polymorpha HOM05D003603 ORTHO05D004186 1.5e-79 299.3 136 100.0
SMO147G0326 Selaginella moellendorffii HOM05D003603 ORTHO05D004186 2.4e-16 89.4 72 61.1
SEGI_08166 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 3.1e-16 89.0 79 60.8
SEGI_33169 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 3.1e-16 89.0 79 60.8
ATR0829G136 Amborella trichopoda HOM05D003603 ORTHO05D004186 2.2e-14 82.8 84 48.8
Pp3c10_15200 Physcomitrium patens HOM05D003603 ORTHO05D004186 3.8e-14 82.0 84 48.8
Thhalv10017363m.g Eutrema salsugineum HOM05D003603 ORTHO05D004186 1.1e-13 80.5 67 56.7
Duzib068G0284 Durio zibethinus HOM05D003603 ORTHO05D004186 1.9e-13 79.7 86 51.2
ECA233G2030 Erigeron canadensis HOM05D003603 ORTHO05D004186 3.2e-13 79.0 78 51.3
PGR031G2143 Punica granatum HOM05D003603 ORTHO05D004186 3.2e-13 79.0 99 44.4
A04p26990 Brassica napus HOM05D003603 ORTHO05D004186 4.2e-13 78.6 63 60.3
BraA04t18200Z Brassica rapa HOM05D003603 ORTHO05D004186 4.2e-13 78.6 63 60.3
Atru.chr6.1552 Acer truncatum HOM05D003603 ORTHO05D004186 5.5e-13 78.2 77 49.4
CARHR129770 Cardamine hirsuta HOM05D003603 ORTHO05D004186 5.5e-13 78.2 71 50.7
Gohir.A03G000024 Gossypium hirsutum HOM05D003603 ORTHO05D004186 5.5e-13 78.2 65 56.9
Gohir.D03G177000 Gossypium hirsutum HOM05D003603 ORTHO05D004186 5.5e-13 78.2 65 56.9
Gorai.003G186200 Gossypium raimondii HOM05D003080 ORTHO05D003601 5.5e-13 78.2 65 56.9
Cc08_g03850 Coffea canephora HOM05D003603 ORTHO05D004186 9.4e-13 77.4 65 52.3
Manes.15G192766 Manihot esculenta HOM05D003603 ORTHO05D004186 1.6e-12 76.6 74 48.6
Phvul.002G133800 Phaseolus vulgaris HOM05D003603 ORTHO05D004186 2.1e-12 76.3 64 56.2
THA.LOC104798506 Tarenaya hassleriana HOM05D003603 ORTHO05D004186 2.1e-12 76.3 84 48.8
A09p34230 Brassica napus HOM05D003603 ORTHO05D004186 2.7e-12 75.9 85 44.7
BraA09t38971Z Brassica rapa HOM05D003603 ORTHO05D004186 2.7e-12 75.9 85 44.7
BraA05t19955Z Brassica rapa HOM05D003603 ORTHO05D004186 3.6e-12 75.5 64 56.2
CsaV3_3G001240 Cucumis sativus L. HOM05D003603 ORTHO05D004186 3.6e-12 75.5 79 44.3
Lsat_1_v5_gn_6_17681 Lactuca sativa HOM05D003603 ORTHO05D004186 3.6e-12 75.5 78 50.0
Lsat_1_v5_gn_6_73320 Lactuca sativa HOM05D003603 ORTHO05D004186 3.6e-12 75.5 75 49.3
AT1G31940 Arabidopsis thaliana HOM05D003603 ORTHO05D004186 4.7e-12 75.1 64 54.7
COL.COLO4_16913 Corchorus olitorius HOM05D003603 ORTHO05D004186 4.7e-12 75.1 84 50.0
TWI81G0448 Tripterygium wilfordii HOM05D003603 ORTHO05D004186 4.7e-12 75.1 65 52.3
Ah.12g055980 Amaranthus hybridus HOM05D003603 ORTHO05D004186 6.1e-12 74.7 65 56.9
BcaC05g27937 Brassica carinata HOM05D003603 ORTHO05D004186 6.1e-12 74.7 64 53.1
C05p39410 Brassica napus HOM05D003603 ORTHO05D004186 6.1e-12 74.7 64 53.1
BolC5t32678H Brassica oleracea HOM05D003603 ORTHO05D004186 6.1e-12 74.7 64 53.1
CDE03G0025 Ceratophyllum demersum HOM05D003603 ORTHO05D004186 6.1e-12 74.7 67 52.2
AUR62027323 Chenopodium quinoa HOM05D003603 ORTHO05D004186 6.1e-12 74.7 73 53.4
Sp4g17800 Schrenkiella parvula HOM05D003603 ORTHO05D004186 6.1e-12 74.7 69 55.1
A05p10140 Brassica napus HOM05D003603 ORTHO05D004186 7.9e-12 74.3 64 56.2
Oeu017100.1 Olea europaea HOM05D003603 ORTHO05D004186 7.9e-12 74.3 68 52.9
Sp1g27670 Schrenkiella parvula HOM05D003603 ORTHO05D004186 7.9e-12 74.3 54 59.3
Thecc.03G312100 Theobroma cacao HOM05D003603 ORTHO05D004186 7.9e-12 74.3 86 48.8
VMungo1215G0432 Vigna mungo HOM05D003603 ORTHO05D004186 7.9e-12 74.3 63 55.6
ClCG10G001200 Citrullus lanatus HOM05D003603 ORTHO05D004186 1.0e-11 73.9 79 43.0
Glyma.09G210200 Glycine max HOM05D003603 ORTHO05D004186 1.0e-11 73.9 63 55.6
MBI04_g20981_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D004186 1.0e-11 73.9 75 46.7
TPR.G19474 Trifolium pratense HOM05D003603 ORTHO05D004186 1.0e-11 73.9 67 52.2
GSVIVG01013000001 Vitis vinifera HOM05D003603 ORTHO05D004186 1.0e-11 73.9 72 51.4
AL4G31620 Arabidopsis lyrata HOM05D003603 ORTHO05D004186 1.4e-11 73.6 68 48.5
arahy.Tifrunner.gnm1.ann1.JMHQ16 Arachis hypogaea HOM05D003603 ORTHO05D004186 1.4e-11 73.6 74 50.0
arahy.Tifrunner.gnm1.ann1.Z69TJ6 Arachis hypogaea HOM05D003603 ORTHO05D004186 1.4e-11 73.6 74 50.0
Carub.0001s3027 Capsella rubella HOM05D003603 ORTHO05D004186 1.4e-11 73.6 64 53.1
AUR62007409 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.4e-11 73.6 65 56.9
MELO3C013813.2 Cucumis melo HOM05D003603 ORTHO05D004186 1.4e-11 73.6 79 43.0
Lalb_Chr05g0215661 Lupinus albus HOM05D003603 ORTHO05D004186 1.4e-11 73.6 57 59.6
Medtr5g027940 Medicago truncatula HOM05D003603 ORTHO05D004186 1.4e-11 73.6 66 53.0
Nitab4.5_0000301g0080 Nicotiana tabacum HOM05D003603 ORTHO05D004186 1.4e-11 73.6 63 52.4
Sed0026512 Sechium edule HOM05D003603 ORTHO05D004186 1.4e-11 73.6 68 50.0
Aa31LG2G14110 Aethionema arabicum HOM05D003603 ORTHO05D004186 1.8e-11 73.2 64 51.6
Aqoxy3G02143 Aquilegia oxysepala HOM05D003603 ORTHO05D004186 1.8e-11 73.2 69 53.6
BcaC05g27220 Brassica carinata HOM05D003603 ORTHO05D004186 1.8e-11 73.2 83 48.2
A05p25320 Brassica napus HOM05D003603 ORTHO05D004186 1.8e-11 73.2 64 51.6
BolC5t31853H Brassica oleracea HOM05D003603 ORTHO05D004186 1.8e-11 73.2 83 48.2
BraA05t21417Z Brassica rapa HOM05D003603 ORTHO05D004186 1.8e-11 73.2 64 51.6
Carub.0004s1726 Capsella rubella HOM05D003603 ORTHO05D004186 1.8e-11 73.2 77 48.1
CARHR031290 Cardamine hirsuta HOM05D003603 ORTHO05D004186 1.8e-11 73.2 63 54.0
Eucgr.D02636 Eucalyptus grandis HOM05D003603 ORTHO05D004186 1.8e-11 73.2 57 57.9
RcHm_v2.0_Chr7g0212381 Rosa chinensis HOM05D003603 ORTHO05D004186 1.8e-11 73.2 68 51.5
Hund11105 Selenicereus undatus HOM05D003603 ORTHO05D004186 1.8e-11 73.2 75 49.3
SGA_v2.0_scaffold96G29046 Striga asiatica HOM05D003603 ORTHO05D004186 1.8e-11 73.2 76 46.1
Aa31LG9G15610 Aethionema arabicum HOM05D003603 ORTHO05D004186 2.3e-11 72.8 56 55.4
FvH4_5g23370 Fragaria vesca HOM05D003603 ORTHO05D004186 2.3e-11 72.8 68 50.0
FAN08G0102 Fragaria x ananassa HOM05D003603 ORTHO05D004186 2.3e-11 72.8 68 50.0
FAN13G0864 Fragaria x ananassa HOM05D003603 ORTHO05D004186 2.3e-11 72.8 68 50.0
FAN18G1056 Fragaria x ananassa HOM05D003603 ORTHO05D004186 2.3e-11 72.8 68 50.0
FAN18G2371 Fragaria x ananassa HOM05D003603 ORTHO05D004186 2.3e-11 72.8 68 50.0
Nitab4.5_0002429g0050 Nicotiana tabacum HOM05D003603 ORTHO05D004186 2.3e-11 72.8 61 55.7
Os02g0697700 Oryza sativa ssp. japonica HOM05D003603 ORTHO05D004186 2.3e-11 72.8 64 54.7
HPP92_005435 Vanilla planifolia HOM05D003603 ORTHO05D004186 2.3e-11 72.8 68 55.9
HPP92_005441 Vanilla planifolia HOM05D003603 ORTHO05D004186 2.3e-11 72.8 68 55.9
EL10Ac5g11930 Beta vulgaris HOM05D003603 ORTHO05D004186 3.0e-11 72.4 66 54.5
FAN04G2484 Fragaria x ananassa HOM05D003603 ORTHO05D004186 3.0e-11 72.4 68 50.0
Lj2g0008166 Lotus japonicus HOM05D003603 ORTHO05D004186 3.0e-11 72.4 62 56.5
Lalb_Chr16g0380941 Lupinus albus HOM05D003603 ORTHO05D004186 3.0e-11 72.4 63 54.0
Actinidia01335 Actinidia chinensis HOM05D003603 ORTHO05D004186 3.9e-11 72.0 65 52.3
ATR0598G345 Amborella trichopoda HOM05D003603 ORTHO05D004186 3.9e-11 72.0 60 53.3
BcaB02g09414 Brassica carinata HOM05D003603 ORTHO05D004186 3.9e-11 72.0 64 50.0
BcaNung07274 Brassica carinata HOM05D003603 ORTHO05D004186 3.9e-11 72.0 67 55.2
C04p64400 Brassica napus HOM05D003603 ORTHO05D004186 3.9e-11 72.0 67 55.2
BolC4t27924H Brassica oleracea HOM05D003603 ORTHO05D004186 3.9e-11 72.0 67 55.2
CSS0028298 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 3.9e-11 72.0 68 50.0
Manes.17G016002 Manihot esculenta HOM05D003603 ORTHO05D004186 3.9e-11 72.0 69 50.7
CANSAT21G0457 Cannabis sativa HOM05D003603 ORTHO05D004186 5.1e-11 71.6 64 54.7
CANSAT56G3990 Cannabis sativa HOM05D003603 ORTHO05D004186 5.1e-11 71.6 64 54.7
Ciclev10002760m.g Citrus clementina HOM05D003603 ORTHO05D004186 5.1e-11 71.6 61 55.7
Peaxi162Scf00045g00444 Petunia axillaris HOM05D003603 ORTHO05D004186 5.1e-11 71.6 71 47.9
Peaxi162Scf00052g00329 Petunia axillaris HOM05D003603 ORTHO05D004186 5.1e-11 71.6 84 40.5
Glyma.01G010900 Glycine max HOM05D003603 ORTHO05D004186 6.7e-11 71.2 63 54.0
Gohir.A11G028400 Gossypium hirsutum HOM05D003603 ORTHO05D004186 6.7e-11 71.2 72 51.4
Gohir.D11G030800 Gossypium hirsutum HOM05D003603 ORTHO05D004186 6.7e-11 71.2 72 51.4
Sabra01G0104400 Salix brachista HOM05D003603 ORTHO05D004186 6.7e-11 71.2 61 55.7
Hund14334 Selenicereus undatus HOM05D003603 ORTHO05D004186 6.7e-11 71.2 68 57.4
TWI15G1018 Tripterygium wilfordii HOM05D003603 ORTHO05D004186 6.7e-11 71.2 71 49.3
BcaB03g13776 Brassica carinata HOM05D003603 ORTHO05D004186 8.8e-11 70.9 52 57.7
Thhalv10008962m.g Eutrema salsugineum HOM05D003603 ORTHO05D004186 8.8e-11 70.9 63 50.8
HanXRQChr13g0404821 Helianthus annuus HOM05D003603 ORTHO05D004186 8.8e-11 70.9 66 53.0
Actinidia29278 Actinidia chinensis HOM05D003603 ORTHO05D004186 1.1e-10 70.5 65 52.3
MSTRG.1790 Avicennia marina HOM05D003603 ORTHO05D004186 1.1e-10 70.5 72 44.4
Nitab4.5_0001632g0070 Nicotiana tabacum HOM05D003603 ORTHO05D004186 1.1e-10 70.5 61 54.1
Potri.001G135000 Populus trichocarpa HOM05D003603 ORTHO05D004186 1.1e-10 70.5 76 50.0
Prupe.5G026000 Prunus persica HOM05D003603 ORTHO05D004186 1.1e-10 70.5 64 51.6
Solyc08g076180.3 Solanum lycopersicum HOM05D003603 ORTHO05D004186 1.1e-10 70.5 60 53.3
Sopen08g024820 Solanum pennellii HOM05D003603 ORTHO05D004186 1.1e-10 70.5 60 53.3
PGSC0003DMG400009296 Solanum tuberosum HOM05D003603 ORTHO05D004186 1.1e-10 70.5 60 53.3
Ah.07g201360 Amaranthus hybridus HOM05D003603 ORTHO05D004186 1.5e-10 70.1 65 52.3
Ca_25158_v3 Cicer arietinum L. HOM05D003603 ORTHO05D004186 1.5e-10 70.1 65 52.3
Dinv06911 Davidia involucrata HOM05D003603 ORTHO05D004186 1.5e-10 70.1 54 55.6
Dinv29021 Davidia involucrata HOM05D003603 ORTHO05D004186 1.5e-10 70.1 65 50.8
Gorai.007G033700 Gossypium raimondii HOM05D003603 ORTHO05D004186 1.5e-10 70.1 70 47.1
Hma1.2p1_0803F.1_g220845 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 1.5e-10 70.1 71 50.7
Hma1.2p1_0803F.1_g220850 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 1.5e-10 70.1 71 50.7
MD06G1024900 Malus domestica HOM05D003603 ORTHO05D004186 1.5e-10 70.1 63 52.4
Nitab4.5_0005370g0020 Nicotiana tabacum HOM05D003603 ORTHO05D004186 1.5e-10 70.1 60 53.3
ECA240G0026 Erigeron canadensis HOM05D003584 ORTHO05D004148 2.0e-10 69.7 59 54.2
HanXRQChr03g0082031 Helianthus annuus HOM05D003603 ORTHO05D004186 2.0e-10 69.7 77 45.5
Nn1g01903 Nelumbo nucifera HOM05D003603 ORTHO05D004186 2.0e-10 69.7 82 45.1
Psat2g140080 Pisum sativum HOM05D003603 ORTHO05D004186 2.0e-10 69.7 62 54.8
Sc07g0008400 Simmondsia chinensis HOM05D003603 ORTHO05D004186 2.0e-10 69.7 59 55.9
SGA_v2.0_scaffold111G31383 Striga asiatica HOM05D003603 ORTHO05D004186 2.0e-10 69.7 79 44.3
CiPaw.12G069800 Carya illinoinensis HOM05D003603 ORTHO05D004186 2.6e-10 69.3 58 50.0
DCAR_008204 Daucus carota HOM05D003603 ORTHO05D004186 2.6e-10 69.3 54 55.6
Nn3g19353 Nelumbo nucifera HOM05D003603 ORTHO05D004186 2.6e-10 69.3 65 44.6
TAR375G0833 Trochodendron aralioides HOM05D003603 ORTHO05D004186 2.6e-10 69.3 65 52.3
AL1G46040 Arabidopsis lyrata HOM05D003603 ORTHO05D004186 3.3e-10 68.9 63 54.0
Hma1.2p1_1819F.1_g304070 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 5.7e-10 68.2 57 56.1
CSS0006858 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 9.7e-10 67.4 67 47.8
CDE06G0200 Ceratophyllum demersum HOM05D003603 ORTHO05D004186 9.7e-10 67.4 44 63.6
PSO782G4801 Papaver somniferum HOM05D003603 ORTHO05D004186 9.7e-10 67.4 60 46.7
CSS0011703 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 1.3e-09 67.0 63 49.2
DCAR_004264 Daucus carota HOM05D003603 ORTHO05D004186 1.7e-09 66.6 58 55.2
TAR636G1298 Trochodendron aralioides HOM05D003603 ORTHO05D004186 1.7e-09 66.6 62 48.4
Pp3c16_20090 Physcomitrium patens HOM05D003603 ORTHO05D004186 2.2e-09 66.2 51 60.8
Zm00001eb251500 Zea mays HOM05D003603 ORTHO05D004186 2.2e-09 66.2 64 50.0
PSO063G1743 Papaver somniferum HOM05D003603 ORTHO05D004186 2.8e-09 65.9 53 50.9
Migut.E01327 Erythranthe guttata HOM05D003603 ORTHO05D004186 3.7e-09 65.5 53 54.7
Peaxi162Scf00185g01122 Petunia axillaris HOM05D003603 ORTHO05D004186 3.7e-09 65.5 62 48.4
Rhsim11G0028200 Rhododendron simsii HOM05D003603 ORTHO05D004186 3.7e-09 65.5 67 50.7
HPP92_014701 Vanilla planifolia HOM05D003603 ORTHO05D004186 3.7e-09 65.5 72 44.4
SalBow1G3570 Salvia bowleyana HOM05D003603 ORTHO05D004186 4.8e-09 65.1 66 51.5
SalBow1G4269 Salvia bowleyana HOM05D003603 ORTHO05D004186 4.8e-09 65.1 66 51.5
CAN.G474.26 Capsicum annuum HOM05D003603 ORTHO05D004186 8.2e-09 64.3 70 44.3
Pp3c19_18080 Physcomitrium patens HOM05D003603 ORTHO05D004186 8.2e-09 64.3 77 45.5
SalBow8G3962 Salvia bowleyana HOM05D003603 ORTHO05D004186 8.2e-09 64.3 53 56.6
PGSC0003DMG400016765 Solanum tuberosum HOM05D003603 ORTHO05D004186 8.2e-09 64.3 79 39.2
MSTRG.25700 Avicennia marina HOM05D003603 ORTHO05D004186 1.4e-08 63.5 53 50.9
Sopen06g021730 Solanum pennellii HOM05D003603 ORTHO05D004186 1.4e-08 63.5 51 54.9
Lj8A318T46 Lonicera japonica HOM05D003603 ORTHO05D004186 1.8e-08 63.2 75 44.0
Solyc06g066290.3 Solanum lycopersicum HOM05D003603 ORTHO05D004186 3.1e-08 62.4 61 45.9
Pp3c8_8000 Physcomitrium patens HOM05D003603 ORTHO05D004186 4.1e-08 62.0 76 47.4
Migut.A00590 Erythranthe guttata HOM05D003603 ORTHO05D004186 5.3e-08 61.6 52 51.9
CSS0005647 Camellia sinensis var. sinensis HOM05D008187 ORTHO05D009830 7.0e-08 61.2 92 38.0
TAR622G0296 Trochodendron aralioides HOM05D008187 ORTHO05D009830 1.5e-07 60.1 89 38.2
Ca_18193_v3 Cicer arietinum L. HOM05D008187 ORTHO05D009830 5.9e-07 58.2 90 35.6
Dinv08898 Davidia involucrata HOM05D008187 ORTHO05D009830 7.7e-07 57.8 95 35.8
QL12p000179 Quercus lobata HOM05D003603 ORTHO05D004186 7.7e-07 57.8 118 33.1
Glyma.08G092600 Glycine max HOM05D008187 ORTHO05D009830 1.0e-06 57.4 66 39.4
Psat7g085360 Pisum sativum HOM05D008187 ORTHO05D009830 1.3e-06 57.0 108 29.6
Actinidia34059 Actinidia chinensis HOM05D008187 ORTHO05D009830 1.7e-06 56.6 40 52.5
Dinv20504 Davidia involucrata HOM05D008187 ORTHO05D009830 1.7e-06 56.6 64 42.2
Dinv20537 Davidia involucrata HOM05D008187 ORTHO05D009830 1.7e-06 56.6 64 42.2
Pp3c22_13200 Physcomitrium patens HOM05D003603 ORTHO05D004186 1.7e-06 56.6 65 47.7
Lj4g0022895 Lotus japonicus HOM05D008187 ORTHO05D009830 2.9e-06 55.8 71 39.4
Phvul.002G184100 Phaseolus vulgaris HOM05D008187 ORTHO05D009830 2.9e-06 55.8 45 51.1
Lalb_Chr07g0187941 Lupinus albus HOM05D008187 ORTHO05D009830 3.8e-06 55.5 50 50.0
Peaxi162Scf00009g00286 Petunia axillaris HOM05D003603 ORTHO05D004186 3.8e-06 55.5 59 45.8
VMungo0251G0444 Vigna mungo HOM05D008187 ORTHO05D009830 3.8e-06 55.5 71 38.0
unitig_32.g11622 Utricularia gibba HOM05D003603 ORTHO05D004186 5.0e-06 55.1 53 47.2
Pp3c27_6140 Physcomitrium patens HOM05D003603 ORTHO05D004186 6.5e-06 54.7 52 48.1
Actinidia38421 Actinidia chinensis HOM05D008187 ORTHO05D009830 8.5e-06 54.3 40 52.5


User provided reference genes

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