Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 2.6e-107 392.1 206 100.0
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 9.7e-62 240.7 172 71.5
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 9.4e-57 224.2 200 60.0
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.6e-56 223.4 149 72.5
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 2.1e-56 223.0 167 66.5
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 3.6e-56 222.2 184 62.0
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 3.6e-56 222.2 184 62.0
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 6.1e-56 221.5 167 65.9
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.0e-55 220.7 167 65.9
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 1.0e-55 220.7 194 59.3
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 3.9e-55 218.8 190 60.5
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 5.2e-55 218.4 192 57.8
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 5.2e-55 218.4 198 57.6
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 8.8e-55 217.6 167 64.7
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 8.8e-55 217.6 191 60.2
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 1.1e-54 217.2 194 58.8
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.6e-54 216.1 171 63.7
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 2.6e-54 216.1 195 57.9
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 3.3e-54 215.7 186 58.6
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 3.3e-54 215.7 186 59.1
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 3.3e-54 215.7 198 56.6
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 3.3e-54 215.7 189 58.2
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 3.3e-54 215.7 196 56.1
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 3.3e-54 215.7 196 59.2
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 4.4e-54 215.3 186 58.1
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 4.4e-54 215.3 185 61.1
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 4.4e-54 215.3 189 58.2
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 5.7e-54 214.9 196 59.7
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 5.7e-54 214.9 193 58.5
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 7.4e-54 214.5 195 58.5
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 9.7e-54 214.2 183 59.0
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 9.7e-54 214.2 173 63.6
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 9.7e-54 214.2 194 58.2
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 9.7e-54 214.2 195 59.0
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 9.7e-54 214.2 192 58.3
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 9.7e-54 214.2 186 58.6
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 9.7e-54 214.2 192 58.3
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 1.3e-53 213.8 189 57.1
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.7e-53 213.4 167 64.1
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.7e-53 213.4 184 58.7
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 1.7e-53 213.4 194 58.8
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 2.2e-53 213.0 173 63.6
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 2.2e-53 213.0 193 58.5
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 2.8e-53 212.6 192 58.3
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 3.7e-53 212.2 189 57.7
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 4.8e-53 211.8 191 58.1
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 4.8e-53 211.8 191 57.1
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 6.3e-53 211.5 194 56.2
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 6.3e-53 211.5 175 60.6
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 8.2e-53 211.1 191 57.1
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 8.2e-53 211.1 187 57.2
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 8.2e-53 211.1 189 59.8
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 8.2e-53 211.1 188 57.4
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.1e-52 210.7 189 59.8
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 1.1e-52 210.7 196 56.1
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 1.1e-52 210.7 194 58.8
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.1e-52 210.7 193 59.6
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 1.1e-52 210.7 194 58.8
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.4e-52 210.3 189 59.8
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.4e-52 210.3 178 58.4
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 2.4e-52 209.5 192 57.3
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 2.4e-52 209.5 185 59.5
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 2.4e-52 209.5 185 57.8
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 2.4e-52 209.5 194 57.2
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 3.1e-52 209.1 169 63.9
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.1e-52 209.1 197 55.3
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 4.1e-52 208.8 149 68.5
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 5.3e-52 208.4 178 60.1
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 7.0e-52 208.0 204 55.9
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 7.0e-52 208.0 190 55.3
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 7.0e-52 208.0 197 55.8
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 9.1e-52 207.6 199 56.3
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 9.1e-52 207.6 189 56.1
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 1.2e-51 207.2 192 55.7
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 1.6e-51 206.8 196 57.1
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.6e-51 206.8 171 59.6
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.0e-51 206.5 191 55.0
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 2.0e-51 206.5 195 56.9
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 2.0e-51 206.5 190 57.4
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 2.6e-51 206.1 207 53.6
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 4.5e-51 205.3 188 55.9
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 4.5e-51 205.3 192 58.3
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 4.5e-51 205.3 193 57.0
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 5.9e-51 204.9 194 54.6
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.0e-50 204.1 198 54.5
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.0e-50 204.1 192 57.8
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.3e-50 203.8 198 56.6
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 1.7e-50 203.4 195 54.9
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 1.7e-50 203.4 191 56.0
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.7e-50 203.4 188 57.4
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 2.9e-50 202.6 193 57.0
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.0e-50 201.8 200 56.0
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 1.5e-49 200.3 197 55.8
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.5e-49 200.3 184 57.6
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.5e-49 200.3 184 57.6
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 1.9e-49 199.9 188 55.9
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 5.5e-49 198.4 150 64.7
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 7.2e-49 198.0 194 54.6
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 7.2e-49 198.0 194 54.6
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 9.4e-49 197.6 149 63.8
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.1e-48 196.4 183 57.9
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 2.7e-48 196.1 180 57.8
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.7e-48 195.3 197 55.3
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 4.7e-48 195.3 183 56.8
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 4.7e-48 195.3 190 56.8
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 8.0e-48 194.5 187 55.1
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 1.8e-47 193.4 183 56.8
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.8e-47 193.4 189 55.6
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.0e-47 192.2 213 50.7
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 5.2e-47 191.8 183 56.8
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 6.7e-47 191.4 171 57.3
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 1.2e-46 190.7 206 50.5
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.0e-46 189.9 159 59.7
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 2.0e-46 189.9 149 64.4
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 4.4e-46 188.7 183 54.1
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 9.7e-46 187.6 201 49.8
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.7e-45 186.8 169 56.2
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 3.7e-45 185.7 171 57.9
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 3.1e-44 182.6 193 50.3
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 5.3e-44 181.8 171 56.1
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.6e-43 180.3 171 56.1
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 2.7e-43 179.5 279 40.1
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 3.5e-43 179.1 208 48.6
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 5.9e-43 178.3 159 57.9
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.3e-42 177.2 194 50.5
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.2e-42 176.4 173 57.2
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 4.2e-41 172.2 119 73.1
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 1.4e-39 167.2 158 56.3
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.3e-37 160.6 158 52.5
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 4.8e-37 158.7 121 66.1
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.6e-35 153.7 121 63.6
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 3.3e-33 146.0 118 63.6
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 4.2e-33 145.6 111 64.9
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.6e-32 142.5 154 51.3
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 4.7e-32 142.1 183 45.9
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 8.9e-31 137.9 108 66.7
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 4.1e-28 129.0 104 63.5
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 1.2e-27 127.5 102 65.7
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 2.5e-25 119.8 96 60.4
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.3e-25 119.4 187 36.9
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.1e-24 116.7 177 41.8
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.1e-24 116.7 168 42.3
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 2.7e-19 99.8 126 48.4
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 2.1e-16 90.1 151 37.1
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 8.0e-16 88.2 67 58.2
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 4.4e-14 82.4 182 30.2
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.3e-13 80.9 67 53.7
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 1.9e-12 77.0 49 63.3
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 6.0e-11 72.0 84 46.4
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 5.0e-10 68.9 53 64.2
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.1e-09 67.8 68 48.5
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 6.8e-07 58.5 53 60.4
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.2e-06 57.8 79 38.0


User provided reference genes

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