Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 1.7e-129 466.1 249 100.0
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 5.1e-73 278.5 212 67.9
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 4.7e-71 271.9 240 62.5
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 6.9e-46 188.3 158 62.0
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 1.2e-45 187.6 240 44.6
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.2e-45 187.6 218 48.6
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 3.4e-45 186.0 255 43.1
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 1.3e-44 184.1 193 48.2
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 1.7e-44 183.7 195 47.2
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.2e-44 183.3 196 48.0
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 3.8e-44 182.6 196 48.5
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 3.8e-44 182.6 196 47.4
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 4.9e-44 182.2 195 47.2
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 4.9e-44 182.2 196 49.0
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 6.5e-44 181.8 216 45.4
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 6.5e-44 181.8 246 43.1
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 6.5e-44 181.8 246 43.1
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 1.1e-43 181.0 206 44.2
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 1.4e-43 180.6 222 44.1
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 1.4e-43 180.6 244 42.6
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 1.9e-43 180.3 245 44.1
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 1.9e-43 180.3 224 43.3
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 2.5e-43 179.9 202 47.0
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 2.5e-43 179.9 196 48.0
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 3.2e-43 179.5 195 46.7
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 3.2e-43 179.5 239 42.7
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 3.2e-43 179.5 224 43.3
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 4.2e-43 179.1 238 43.3
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 4.2e-43 179.1 241 43.2
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 5.5e-43 178.7 196 46.9
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 5.5e-43 178.7 196 47.4
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 7.1e-43 178.3 190 46.8
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 1.6e-42 177.2 240 43.8
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 2.1e-42 176.8 213 45.1
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 2.7e-42 176.4 233 43.3
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 3.5e-42 176.0 197 47.2
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 6.0e-42 175.3 244 41.8
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 6.0e-42 175.3 206 44.2
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 6.0e-42 175.3 196 46.4
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 7.9e-42 174.9 230 43.5
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 7.9e-42 174.9 213 45.1
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 1.0e-41 174.5 196 45.4
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 1.0e-41 174.5 239 40.6
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 1.0e-41 174.5 244 43.9
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 1.3e-41 174.1 239 40.6
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 1.3e-41 174.1 190 45.3
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 1.8e-41 173.7 190 46.3
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 1.8e-41 173.7 196 46.4
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 1.8e-41 173.7 196 46.4
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 1.8e-41 173.7 187 47.6
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 2.3e-41 173.3 190 44.7
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 2.3e-41 173.3 202 45.5
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 2.3e-41 173.3 190 46.3
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 2.3e-41 173.3 202 44.6
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 2.3e-41 173.3 224 41.1
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 3.0e-41 172.9 190 46.3
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 3.9e-41 172.6 201 45.3
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 5.1e-41 172.2 190 44.2
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 5.1e-41 172.2 202 46.0
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 6.7e-41 171.8 218 42.7
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 6.7e-41 171.8 196 46.9
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 6.7e-41 171.8 226 41.2
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 8.7e-41 171.4 185 48.1
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 8.7e-41 171.4 196 45.9
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 8.7e-41 171.4 196 45.4
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 1.1e-40 171.0 202 44.1
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 1.1e-40 171.0 246 41.1
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 1.1e-40 171.0 190 43.7
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 1.5e-40 170.6 190 44.7
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 1.9e-40 170.2 190 44.2
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 2.5e-40 169.9 239 43.1
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 2.5e-40 169.9 202 45.0
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 4.3e-40 169.1 196 43.9
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 9.7e-40 167.9 202 43.6
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 9.7e-40 167.9 196 43.9
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 9.7e-40 167.9 233 42.5
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 1.6e-39 167.2 230 40.4
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 2.2e-39 166.8 202 44.6
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 2.2e-39 166.8 246 43.1
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 2.8e-39 166.4 238 42.9
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 2.8e-39 166.4 200 43.0
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 2.8e-39 166.4 247 40.5
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 2.8e-39 166.4 247 41.3
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 3.7e-39 166.0 213 43.2
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 6.3e-39 165.2 185 45.9
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 8.2e-39 164.9 190 42.1
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 8.2e-39 164.9 213 42.7
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 8.2e-39 164.9 187 46.0
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.8e-38 163.7 202 44.1
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 1.8e-38 163.7 206 42.7
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 2.4e-38 163.3 190 43.7
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 5.3e-38 162.2 208 42.8
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 5.3e-38 162.2 226 38.9
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 6.9e-38 161.8 196 42.9
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 9.0e-38 161.4 185 44.9
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 1.2e-37 161.0 190 42.6
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 1.2e-37 161.0 238 39.5
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.5e-37 160.6 190 41.6
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 2.0e-37 160.2 229 41.0
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.0e-37 160.2 230 41.7
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.0e-37 160.2 229 41.0
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.0e-37 160.2 229 41.0
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 2.0e-37 160.2 202 43.6
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 2.0e-37 160.2 214 42.1
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 3.4e-37 159.5 239 39.7
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 3.4e-37 159.5 240 40.0
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 5.9e-37 158.7 185 44.9
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 1.3e-36 157.5 185 44.9
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 1.7e-36 157.1 190 41.1
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 2.9e-36 156.4 224 40.6
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 6.5e-36 155.2 224 38.8
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 6.5e-36 155.2 231 39.8
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 8.5e-36 154.8 224 38.4
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 1.9e-35 153.7 187 41.7
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 1.9e-35 153.7 187 41.7
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 1.9e-35 153.7 230 38.3
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 1.9e-35 153.7 187 41.7
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 1.9e-35 153.7 187 41.7
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 1.9e-35 153.7 240 39.6
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 2.5e-35 153.3 230 38.3
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 4.2e-35 152.5 196 40.3
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 4.2e-35 152.5 196 40.3
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 4.2e-35 152.5 230 38.3
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 4.2e-35 152.5 230 38.3
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 4.2e-35 152.5 196 39.8
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 5.5e-35 152.1 196 40.3
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 5.5e-35 152.1 196 40.3
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 5.5e-35 152.1 228 37.7
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 5.5e-35 152.1 187 42.8
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 1.6e-34 150.6 224 37.5
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 3.6e-34 149.4 202 40.1
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 4.6e-34 149.1 224 37.1
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 6.1e-34 148.7 187 40.6
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 6.1e-34 148.7 204 41.2
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 1.8e-33 147.1 183 42.1
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 1.8e-33 147.1 229 39.3
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 2.3e-33 146.7 202 39.6
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 3.0e-33 146.4 196 38.8
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 5.1e-33 145.6 190 39.5
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 5.1e-33 145.6 247 37.7
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 8.8e-33 144.8 224 36.2
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 8.8e-33 144.8 202 38.6
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 1.9e-32 143.7 211 38.4
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.9e-32 143.7 202 39.1
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 9.7e-32 141.4 195 37.9
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 1.3e-31 141.0 202 39.6
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 4.5e-29 132.5 356 30.1
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 2.2e-28 130.2 299 30.1
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 6.5e-28 128.6 239 35.6
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 6.5e-28 128.6 190 40.0
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 3.2e-27 126.3 197 40.6
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 7.2e-27 125.2 115 53.9
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 9.4e-27 124.8 187 36.4
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 2.1e-26 123.6 115 53.9
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 6.3e-23 112.1 144 41.7
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 9.1e-22 108.2 246 31.3
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 1.5e-21 107.5 188 35.6
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 2.0e-21 107.1 164 39.0
Cre16.g680000 Chlamydomonas reinhardtii HOM05D003972 ORTHO05D004609 9.4e-19 98.2 213 31.0
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 8.8e-17 91.7 196 30.1
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 3.7e-15 86.3 156 34.0
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 3.7e-15 86.3 137 36.5
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 1.1e-14 84.7 102 41.2
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 1.1e-14 84.7 146 38.4
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.8e-14 84.0 100 44.0
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 6.7e-09 65.5 71 50.7
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.0e-08 63.9 71 47.9
MCO11G452 Micromonas commoda HOM05D003160 ORTHO05D005967 3.3e-08 63.2 176 25.0
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 3.3e-08 63.2 75 44.0
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 5.7e-08 62.4 71 46.5
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 2.8e-07 60.1 82 39.0
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.4e-06 57.8 76 36.8


User provided reference genes

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