Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 1.8e-179 632.5 320 100.0
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 2.2e-84 316.6 310 54.8
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 6.5e-81 305.1 218 64.2
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 9.4e-80 301.2 233 63.5
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 1.6e-79 300.4 242 60.7
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 2.1e-79 300.1 238 61.3
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 2.7e-79 299.7 242 60.3
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 6.1e-79 298.5 217 64.5
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 1.4e-78 297.4 247 61.9
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 1.4e-78 297.4 215 64.7
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 2.3e-78 296.6 249 58.6
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 3.0e-78 296.2 305 52.1
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 3.0e-78 296.2 223 63.2
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 3.0e-78 296.2 230 60.4
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 3.9e-78 295.8 231 59.7
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 3.9e-78 295.8 223 63.2
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 6.7e-78 295.0 294 54.4
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 8.8e-78 294.7 218 63.8
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 1.1e-77 294.3 223 61.4
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 1.5e-77 293.9 228 61.8
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 2.6e-77 293.1 225 60.4
SMO145G0007 Selaginella moellendorffii HOM05D006179 ORTHO05D008370 3.3e-77 292.7 224 62.1
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 3.3e-77 292.7 254 55.9
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 4.4e-77 292.4 229 61.6
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 4.4e-77 292.4 223 60.5
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 7.4e-77 291.6 238 58.8
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 7.4e-77 291.6 226 61.1
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 9.7e-77 291.2 228 60.5
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 1.7e-76 290.4 218 62.4
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 1.7e-76 290.4 228 61.4
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 1.7e-76 290.4 233 60.5
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 2.2e-76 290.0 230 60.0
AagrBONN_evm.TU.Sc2ySwM_117.3174 Anthoceros agrestis HOM05D006179 ORTHO05D008370 2.8e-76 289.7 218 63.8
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 2.8e-76 289.7 210 63.8
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 3.7e-76 289.3 239 58.2
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 3.7e-76 289.3 215 62.3
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 3.7e-76 289.3 232 60.8
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 4.8e-76 288.9 215 61.9
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 6.3e-76 288.5 240 57.1
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 6.3e-76 288.5 241 58.9
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 8.2e-76 288.1 224 62.5
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 1.1e-75 287.7 229 59.8
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 1.4e-75 287.3 227 61.2
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 1.4e-75 287.3 277 52.0
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 1.4e-75 287.3 228 60.5
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 1.8e-75 287.0 225 61.8
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 2.4e-75 286.6 215 61.9
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 3.1e-75 286.2 224 60.7
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 4.1e-75 285.8 210 62.4
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 7.0e-75 285.0 255 57.3
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 9.1e-75 284.6 228 61.0
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 1.6e-74 283.9 234 58.5
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 2.0e-74 283.5 246 56.1
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 2.0e-74 283.5 233 60.1
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 5.9e-74 282.0 292 52.4
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 5.9e-74 282.0 215 60.9
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 5.9e-74 282.0 230 58.7
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 7.7e-74 281.6 294 52.0
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 7.7e-74 281.6 234 59.8
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 7.7e-74 281.6 234 57.7
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 1.7e-73 280.4 224 58.5
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 1.7e-73 280.4 210 63.8
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 2.2e-73 280.0 211 62.1
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 8.5e-73 278.1 214 60.7
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 1.1e-72 277.7 214 62.1
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 1.1e-72 277.7 233 56.7
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 2.5e-72 276.6 293 52.2
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 2.5e-72 276.6 295 49.5
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 3.2e-72 276.2 249 56.2
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 5.5e-72 275.4 224 58.9
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 7.2e-72 275.0 222 58.6
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 1.2e-71 274.2 350 45.1
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 2.1e-71 273.5 210 61.4
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 3.6e-71 272.7 293 51.9
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 3.6e-71 272.7 226 58.0
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 3.6e-71 272.7 218 58.3
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 8.0e-71 271.6 272 52.9
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 1.8e-70 270.4 293 50.9
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 1.8e-70 270.4 293 50.9
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 1.8e-70 270.4 279 51.3
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 2.3e-70 270.0 304 50.3
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 4.0e-70 269.2 202 60.9
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 5.2e-70 268.9 245 55.5
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 4.4e-69 265.8 302 48.3
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 9.7e-69 264.6 226 54.4
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 1.3e-68 264.2 217 59.4
CBR_g54969 Chara braunii HOM05D006179 ORTHO05D008370 3.7e-68 262.7 334 45.2
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 6.3e-68 261.9 301 49.2
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 8.2e-68 261.5 218 58.7
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 1.4e-67 260.8 191 63.4
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 7.0e-67 258.5 240 54.2
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 1.2e-66 257.7 217 58.5
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 5.9e-66 255.4 240 54.2
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 3.8e-65 252.7 227 55.9
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 3.8e-65 252.7 223 55.6
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 8.5e-65 251.5 232 54.7
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 8.5e-65 251.5 232 54.3
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 2.1e-63 246.9 183 61.2
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 4.0e-62 242.7 179 63.7
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 4.0e-62 242.7 264 48.5
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 1.5e-61 240.7 246 52.4
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 2.0e-61 240.4 231 52.4
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 3.4e-61 239.6 236 53.0
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 9.5e-56 221.5 150 64.0
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 6.8e-54 215.3 150 62.7
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 3.7e-52 209.5 267 46.1
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 3.5e-50 203.0 181 56.9
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 7.8e-50 201.8 141 64.5
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 6.8e-46 188.7 139 62.6
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 5.9e-42 175.6 152 55.3
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 1.5e-40 171.0 168 53.0
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 4.3e-40 169.5 212 44.8
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 1.8e-38 164.1 205 46.3
Cre07.g350400 Chlamydomonas reinhardtii HOM05D006179 ORTHO05D008370 2.9e-36 156.8 183 43.7
AUR62040469 Chenopodium quinoa HOM05D006179 ORTHO05D008370 7.0e-35 152.1 135 56.3
AUR62037598 Chenopodium quinoa HOM05D006179 ORTHO05D007344 3.3e-32 143.3 143 53.8
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 5.2e-30 136.0 198 37.9
AUR62042212 Chenopodium quinoa HOM05D006179 ORTHO05D008370 2.1e-26 124.0 145 48.3
SalBow6G2129 Salvia bowleyana HOM05D006179 ORTHO05D353266 6.6e-17 92.4 134 46.3
CSS0040024 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 4.0e-14 83.2 66 63.6
MD11G1211400 Malus domestica HOM05D004980 ORTHO05D006505 9.6e-08 62.0 122 31.1
SHI26580 Sapria himalayana HOM05D004980 ORTHO05D006505 1.3e-07 61.6 122 33.6
Manes.03G132700 Manihot esculenta HOM05D004980 ORTHO05D006505 2.8e-07 60.5 122 32.8
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 3.6e-07 60.1 132 29.5
Dinv40789 Davidia involucrata HOM05D004980 ORTHO05D006505 4.8e-07 59.7 122 30.3
CSS0002819 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 6.2e-07 59.3 117 32.5
Ca_06343_v3 Cicer arietinum L. HOM05D004980 ORTHO05D006505 8.1e-07 58.9 102 34.3
MD03G1195100 Malus domestica HOM05D004980 ORTHO05D006505 8.1e-07 58.9 122 29.5
arahy.Tifrunner.gnm1.ann1.45FXM1 Arachis hypogaea HOM05D004980 ORTHO05D006505 1.4e-06 58.2 101 32.7
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 1.4e-06 58.2 100 33.0
PSO675G8833 Papaver somniferum HOM05D004980 ORTHO05D006505 1.8e-06 57.8 101 32.7
Psat2g012600 Pisum sativum HOM05D004980 ORTHO05D006505 1.8e-06 57.8 116 31.0
DCAR_016653 Daucus carota HOM05D004980 ORTHO05D006505 2.4e-06 57.4 122 29.5
LjContig00272g0012473 Lotus japonicus HOM05D004980 ORTHO05D006505 2.4e-06 57.4 118 31.4
Eucgr.F00711 Eucalyptus grandis HOM05D004980 ORTHO05D006505 4.0e-06 56.6 116 31.0
Peaxi162Scf00235g00521 Petunia axillaris HOM05D004980 ORTHO05D006505 4.0e-06 56.6 122 32.8
TPR.G1188 Trifolium pratense HOM05D004980 ORTHO05D006505 4.0e-06 56.6 101 30.7
TAR624G0219 Trochodendron aralioides HOM05D004980 ORTHO05D006505 4.0e-06 56.6 122 30.3
Zm00001eb188720 Zea mays HOM05D004980 ORTHO05D006505 5.3e-06 56.2 93 34.4
Zm00001eb375420 Zea mays HOM05D004980 ORTHO05D006505 5.3e-06 56.2 93 34.4
Migut.N00646 Erythranthe guttata HOM05D004980 ORTHO05D006505 6.9e-06 55.8 114 30.7
Sabra16G0233900 Salix brachista HOM05D004980 ORTHO05D006505 6.9e-06 55.8 122 32.8


User provided reference genes

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