Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 1.9e-133 479.2 242 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 8.5e-49 198.0 144 65.3
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 1.6e-47 193.7 208 51.0
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 7.9e-47 191.4 185 53.5
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 2.3e-46 189.9 170 55.9
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 1.1e-45 187.6 160 58.8
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 3.3e-45 186.0 177 54.8
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 5.7e-45 185.3 182 53.8
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 5.7e-45 185.3 188 52.7
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 7.4e-45 184.9 177 54.8
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 9.7e-45 184.5 174 53.4
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 1.3e-44 184.1 172 54.1
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 1.3e-44 184.1 180 53.3
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 1.3e-44 184.1 220 48.2
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 1.7e-44 183.7 171 56.7
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 2.2e-44 183.3 157 57.3
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 2.2e-44 183.3 138 62.3
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 2.8e-44 183.0 160 57.5
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 2.8e-44 183.0 162 56.8
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 4.8e-44 182.2 171 55.0
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 4.8e-44 182.2 181 52.5
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 6.3e-44 181.8 189 50.3
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 6.3e-44 181.8 170 55.3
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 6.3e-44 181.8 176 54.5
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 8.2e-44 181.4 212 49.1
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 8.2e-44 181.4 177 53.7
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.8e-43 180.3 173 53.2
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 2.4e-43 179.9 145 61.4
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 2.4e-43 179.9 147 58.5
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 4.1e-43 179.1 159 57.9
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 5.3e-43 178.7 189 51.3
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 5.3e-43 178.7 171 54.4
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 5.3e-43 178.7 188 50.5
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 9.1e-43 177.9 189 51.3
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 9.1e-43 177.9 192 49.5
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 9.1e-43 177.9 163 53.4
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.2e-42 177.6 186 51.1
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 1.2e-42 177.6 177 52.5
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 1.5e-42 177.2 177 52.0
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 1.5e-42 177.2 181 52.5
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 2.0e-42 176.8 167 52.7
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 2.0e-42 176.8 235 44.7
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 2.0e-42 176.8 169 52.7
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 2.0e-42 176.8 190 50.0
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 2.6e-42 176.4 164 54.9
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 2.6e-42 176.4 199 49.7
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 2.6e-42 176.4 179 51.4
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 3.4e-42 176.0 164 51.8
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 3.4e-42 176.0 142 58.5
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 3.4e-42 176.0 171 53.2
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 3.4e-42 176.0 162 54.9
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 3.4e-42 176.0 185 51.4
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 4.5e-42 175.6 174 52.3
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 4.5e-42 175.6 174 52.3
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.0e-41 174.5 186 49.5
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.3e-41 174.1 187 50.3
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.3e-41 174.1 175 52.6
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 1.3e-41 174.1 185 52.4
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.7e-41 173.7 167 51.5
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 1.7e-41 173.7 191 46.1
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 1.7e-41 173.7 184 50.5
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 2.2e-41 173.3 190 50.5
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 2.9e-41 172.9 205 44.4
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 2.9e-41 172.9 181 50.3
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 2.9e-41 172.9 171 52.0
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 2.9e-41 172.9 145 57.9
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 3.8e-41 172.6 142 57.7
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 3.8e-41 172.6 142 57.7
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 3.8e-41 172.6 142 57.7
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 5.0e-41 172.2 167 51.5
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 5.0e-41 172.2 178 48.9
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 6.5e-41 171.8 150 55.3
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 8.5e-41 171.4 188 50.0
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 8.5e-41 171.4 191 48.7
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 8.5e-41 171.4 200 47.0
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 8.5e-41 171.4 145 57.9
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 8.5e-41 171.4 205 46.8
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 8.5e-41 171.4 177 51.4
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 1.1e-40 171.0 167 52.7
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 1.4e-40 170.6 202 47.0
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 1.4e-40 170.6 181 50.3
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 1.9e-40 170.2 167 52.7
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 1.9e-40 170.2 167 52.7
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 2.5e-40 169.9 164 52.4
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 2.5e-40 169.9 181 50.3
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 2.5e-40 169.9 169 53.3
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 3.2e-40 169.5 146 57.5
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 7.2e-40 168.3 145 57.2
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 4.7e-39 165.6 184 48.4
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 7.9e-39 164.9 195 47.2
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.0e-38 164.5 189 47.6
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 1.4e-38 164.1 186 50.0
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 1.4e-38 164.1 208 43.3
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.8e-38 163.7 162 50.6
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 3.0e-38 162.9 192 47.4
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 3.9e-38 162.5 149 53.0
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 3.9e-38 162.5 149 53.0
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 6.7e-38 161.8 136 57.4
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 6.7e-38 161.8 202 45.0
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 8.8e-38 161.4 161 49.1
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 1.5e-37 160.6 179 48.0
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 2.6e-37 159.8 131 56.5
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 4.4e-37 159.1 194 46.4
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 1.6e-34 150.6 199 41.7
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 1.6e-34 150.6 113 62.8
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 2.6e-34 149.8 133 54.1
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 5.9e-34 148.7 219 41.1
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 2.2e-33 146.7 127 55.1
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 2.5e-32 143.3 157 49.0
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 2.5e-32 143.3 168 47.0
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 8.8e-30 134.8 164 47.0
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 5.7e-29 132.1 170 45.3
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 7.5e-29 131.7 141 51.1
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 2.8e-28 129.8 183 43.2
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 1.8e-22 110.5 88 62.5
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.5e-21 107.5 112 50.0
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 2.6e-21 106.7 94 58.5
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 3.1e-19 99.8 114 47.4
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 4.1e-19 99.4 110 44.5
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 3.2e-16 89.7 112 43.8
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.6e-15 87.4 88 46.6
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 6.1e-15 85.5 63 60.3
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 2.8e-12 76.6 144 34.0
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 8.3e-12 75.1 61 62.3
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 7.0e-11 72.0 48 62.5
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 2.0e-10 70.5 91 45.1
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 3.3e-08 63.2 54 57.4
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 1.2e-07 61.2 171 28.1


User provided reference genes

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