Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 9.5e-72 273.5 145 100.0
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 1.8e-33 146.4 146 56.8
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 7.6e-29 131.0 151 50.3
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 9.9e-29 130.6 128 55.5
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 1.3e-28 130.2 127 56.7
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 1.7e-28 129.8 150 52.0
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 2.2e-28 129.4 140 52.1
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 2.2e-28 129.4 140 52.1
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 3.8e-28 128.6 151 49.7
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 6.4e-28 127.9 151 51.7
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 1.1e-27 127.1 128 54.7
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.1e-27 127.1 128 54.7
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.1e-27 127.1 128 54.7
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 1.1e-27 127.1 128 54.7
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 1.9e-27 126.3 128 54.7
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.4e-27 125.9 128 53.9
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 3.2e-27 125.6 152 50.0
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 3.2e-27 125.6 125 55.2
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 4.2e-27 125.2 151 49.7
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 4.2e-27 125.2 128 54.7
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 5.5e-27 124.8 127 54.3
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 5.5e-27 124.8 127 54.3
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 5.5e-27 124.8 152 49.3
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 7.1e-27 124.4 143 51.0
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 7.1e-27 124.4 140 50.7
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 7.1e-27 124.4 146 50.0
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 7.1e-27 124.4 126 54.8
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 9.3e-27 124.0 149 49.0
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 9.3e-27 124.0 152 47.4
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 9.3e-27 124.0 151 49.7
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 9.3e-27 124.0 152 49.3
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 1.2e-26 123.6 151 49.0
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 1.2e-26 123.6 151 49.0
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.2e-26 123.6 128 53.1
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.2e-26 123.6 128 53.1
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.2e-26 123.6 128 53.1
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 1.2e-26 123.6 147 49.7
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 1.6e-26 123.2 151 47.0
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 1.6e-26 123.2 151 48.3
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 2.1e-26 122.9 149 47.7
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 2.1e-26 122.9 146 50.0
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 2.1e-26 122.9 152 49.3
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 2.1e-26 122.9 152 47.4
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 2.1e-26 122.9 128 53.9
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 2.7e-26 122.5 128 53.9
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 2.7e-26 122.5 152 48.7
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 2.7e-26 122.5 128 53.9
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 2.7e-26 122.5 141 51.8
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 2.7e-26 122.5 128 53.1
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 2.7e-26 122.5 128 53.1
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.5e-26 122.1 151 50.3
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.5e-26 122.1 151 50.3
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.5e-26 122.1 151 50.3
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 3.5e-26 122.1 138 51.4
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 3.5e-26 122.1 147 49.7
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 3.5e-26 122.1 152 50.0
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 3.5e-26 122.1 152 50.0
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 4.6e-26 121.7 152 46.7
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 4.6e-26 121.7 152 48.0
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 6.0e-26 121.3 128 51.6
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 6.0e-26 121.3 147 48.3
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 6.0e-26 121.3 151 48.3
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 6.0e-26 121.3 148 50.7
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 6.0e-26 121.3 151 47.7
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 6.0e-26 121.3 127 51.2
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 6.0e-26 121.3 127 51.2
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 1.0e-25 120.6 128 50.8
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 1.0e-25 120.6 128 53.9
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.0e-25 120.6 143 49.0
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 1.3e-25 120.2 148 48.6
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 1.8e-25 119.8 127 52.8
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 1.8e-25 119.8 147 47.6
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 2.3e-25 119.4 128 51.6
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 2.3e-25 119.4 125 53.6
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 2.3e-25 119.4 151 49.0
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 2.3e-25 119.4 130 53.1
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 3.0e-25 119.0 152 47.4
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 3.9e-25 118.6 151 47.7
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 3.9e-25 118.6 143 48.3
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 5.1e-25 118.2 128 50.8
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 5.1e-25 118.2 128 51.6
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 5.1e-25 118.2 125 52.0
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 6.7e-25 117.9 128 48.4
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 6.7e-25 117.9 128 51.6
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 6.7e-25 117.9 128 51.6
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 6.7e-25 117.9 146 48.6
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 6.7e-25 117.9 125 52.8
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 8.7e-25 117.5 128 51.6
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 1.1e-24 117.1 153 47.7
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.1e-24 117.1 143 48.3
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 1.5e-24 116.7 128 51.6
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.5e-24 116.7 132 52.3
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.5e-24 116.7 132 52.3
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 2.5e-24 115.9 133 48.9
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 2.5e-24 115.9 153 47.7
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 2.5e-24 115.9 130 53.1
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 3.3e-24 115.5 134 50.7
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 4.3e-24 115.2 147 47.6
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 4.3e-24 115.2 152 46.7
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 4.3e-24 115.2 128 50.8
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 5.6e-24 114.8 154 46.1
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 5.6e-24 114.8 125 52.8
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 5.6e-24 114.8 128 51.6
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 7.4e-24 114.4 146 47.3
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 9.6e-24 114.0 120 51.7
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 9.6e-24 114.0 152 43.4
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 1.3e-23 113.6 152 46.7
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 4.8e-23 111.7 139 45.3
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.1e-22 110.5 139 46.0
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 2.4e-22 109.4 128 48.4
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 5.3e-22 108.2 126 50.8
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 3.4e-21 105.5 113 50.4
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 1.0e-20 104.0 127 48.0
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 1.3e-20 103.6 126 47.6
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 1.7e-20 103.2 142 42.3
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 4.2e-19 98.6 110 48.2
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 7.1e-19 97.8 92 56.5
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 7.1e-19 97.8 97 54.6
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 9.3e-19 97.4 139 43.9
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 3.5e-18 95.5 104 49.0
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 2.3e-17 92.8 121 47.9
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 4.8e-15 85.1 138 43.5
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 4.8e-15 85.1 81 51.9
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 4.1e-14 82.0 85 50.6
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 5.3e-14 81.6 85 50.6
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 5.3e-14 81.6 128 41.4
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.6e-10 68.9 82 46.3
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 4.6e-10 68.6 82 46.3
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 7.9e-10 67.8 82 45.1
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 1.8e-09 66.6 152 35.5
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 3.9e-09 65.5 79 38.0
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 2.5e-08 62.8 89 40.4
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 1.3e-07 60.5 78 42.3
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 2.8e-07 59.3 95 34.7
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 4.8e-07 58.5 79 38.0
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 4.8e-07 58.5 79 44.3


User provided reference genes

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