Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 3.9e-196 688.0 354 100.0
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.3e-71 273.5 138 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.8e-68 263.8 305 47.5
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 1.2e-67 261.2 278 50.7
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 3.8e-66 256.1 262 52.7
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 4.0e-63 246.1 261 48.7
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 9.8e-54 214.9 295 41.0
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 1.7e-53 214.2 257 44.0
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 2.2e-53 213.8 258 42.2
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 2.4e-52 210.3 259 44.0
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.3e-50 204.5 262 43.1
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 2.3e-50 203.8 273 42.9
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 3.8e-50 203.0 297 39.4
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 8.6e-50 201.8 264 40.9
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 1.1e-49 201.4 285 42.1
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.5e-49 201.1 262 40.8
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 1.9e-49 200.7 263 42.2
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 1.9e-49 200.7 287 40.4
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 3.3e-49 199.9 259 43.6
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 7.3e-49 198.7 260 43.8
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 7.3e-49 198.7 281 40.6
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 7.3e-49 198.7 266 42.9
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 1.2e-48 198.0 262 40.5
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.8e-48 196.8 260 44.6
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 2.8e-48 196.8 261 41.4
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 3.6e-48 196.4 261 41.8
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 3.6e-48 196.4 260 43.1
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 4.7e-48 196.1 264 40.5
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.7e-48 196.1 262 41.6
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 6.1e-48 195.7 262 40.1
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 6.1e-48 195.7 260 43.5
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 6.1e-48 195.7 259 41.7
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 6.1e-48 195.7 264 39.8
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 6.1e-48 195.7 261 41.4
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 8.0e-48 195.3 259 39.8
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 8.0e-48 195.3 288 39.6
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 8.0e-48 195.3 261 41.0
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 8.0e-48 195.3 262 40.1
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 1.0e-47 194.9 260 40.0
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 1.8e-47 194.1 268 39.9
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 1.8e-47 194.1 259 40.9
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 4.0e-47 193.0 262 40.1
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 1.2e-46 191.4 259 42.5
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.2e-46 191.4 262 41.2
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.2e-46 191.4 262 41.2
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.2e-46 191.4 261 39.8
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 1.5e-46 191.0 259 40.9
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 3.4e-46 189.9 259 42.1
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 3.4e-46 189.9 266 41.0
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 3.4e-46 189.9 264 41.3
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 4.4e-46 189.5 275 40.4
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 5.8e-46 189.1 259 40.9
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 5.8e-46 189.1 259 40.2
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 5.8e-46 189.1 260 40.8
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 1.7e-45 187.6 262 40.5
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 1.7e-45 187.6 262 40.5
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 3.7e-45 186.4 259 39.8
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 6.4e-45 185.7 298 36.9
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 6.4e-45 185.7 264 39.0
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 6.4e-45 185.7 262 41.2
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 8.3e-45 185.3 269 39.0
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 8.3e-45 185.3 259 41.3
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 1.1e-44 184.9 260 38.5
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.1e-44 184.9 260 40.4
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.1e-44 184.9 264 41.3
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 1.4e-44 184.5 260 39.2
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 1.4e-44 184.5 259 40.5
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 1.9e-44 184.1 258 38.8
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.9e-44 184.1 262 40.8
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 1.9e-44 184.1 290 40.7
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 2.4e-44 183.7 261 38.3
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 3.2e-44 183.3 256 39.8
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 3.2e-44 183.3 260 41.2
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 4.1e-44 183.0 332 36.1
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 5.4e-44 182.6 255 41.6
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 5.4e-44 182.6 260 38.5
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 5.4e-44 182.6 275 38.9
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 7.0e-44 182.2 269 40.9
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 9.2e-44 181.8 259 40.2
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.6e-43 181.0 261 37.9
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.6e-43 181.0 275 37.5
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 2.7e-43 180.3 262 38.2
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 2.7e-43 180.3 262 38.5
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 2.7e-43 180.3 262 40.1
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 2.7e-43 180.3 262 38.9
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 2.7e-43 180.3 258 39.5
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 3.5e-43 179.9 275 41.1
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 4.6e-43 179.5 259 39.8
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 6.0e-43 179.1 260 38.8
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 6.0e-43 179.1 262 39.3
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 1.3e-42 177.9 289 37.0
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.3e-42 177.9 267 37.8
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.7e-42 177.6 263 37.3
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 1.7e-42 177.6 263 37.6
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.3e-42 177.2 250 40.0
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 3.0e-42 176.8 263 37.6
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 3.9e-42 176.4 262 37.8
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 3.9e-42 176.4 265 36.6
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 3.9e-42 176.4 265 39.6
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 5.0e-42 176.0 290 37.6
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 6.6e-42 175.6 263 37.6
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 6.6e-42 175.6 263 36.9
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 1.1e-41 174.9 279 35.5
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 2.5e-41 173.7 276 37.3
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 3.3e-41 173.3 265 36.2
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 5.6e-41 172.6 287 34.1
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 7.3e-41 172.2 271 36.2
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 9.5e-41 171.8 278 34.2
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 9.5e-41 171.8 262 36.6
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 1.2e-40 171.4 262 35.9
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 2.1e-40 170.6 261 36.4
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.1e-40 170.6 264 36.7
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.1e-40 170.6 264 35.6
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 3.6e-40 169.9 255 37.6
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 4.7e-40 169.5 255 37.3
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.1e-39 168.3 272 34.2
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.8e-39 167.5 264 36.4
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 2.3e-39 167.2 268 36.9
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 3.1e-39 166.8 262 35.9
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 5.2e-39 166.0 231 39.0
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 5.2e-39 166.0 260 36.2
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 3.4e-38 163.3 297 32.7
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 7.5e-38 162.2 263 33.5
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 3.7e-37 159.8 236 37.7
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 8.3e-37 158.7 191 45.0
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 5.4e-36 156.0 246 37.8
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.6e-34 148.7 202 43.1
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.6e-34 148.7 202 43.1
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.5e-33 147.9 330 32.4
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 2.5e-33 147.1 198 43.4
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 1.2e-32 144.8 203 41.9
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 3.1e-31 140.2 230 35.2
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.6e-27 127.9 169 40.8
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.1e-27 127.5 255 31.4
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 5.1e-26 122.9 172 41.3
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.3e-25 119.8 272 31.2
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 8.1e-24 115.5 202 35.1
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 4.4e-22 109.8 172 37.2
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 1.1e-15 88.6 228 24.6
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 2.4e-15 87.4 242 26.0
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 9.0e-15 85.5 215 26.5
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 2.0e-14 84.3 112 39.3
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 7.6e-14 82.4 97 46.4
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.7e-11 73.9 194 25.8


User provided reference genes

Program Settings