Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 8.9e-90 333.6 167 100.0
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 4.9e-72 274.6 138 100.0
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 4.1e-26 122.1 130 47.7
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 5.3e-26 121.7 135 48.9
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 2.5e-23 112.8 132 45.5
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 5.5e-23 111.7 133 42.1
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.1e-20 104.0 132 46.2
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 1.5e-20 103.6 132 46.2
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.0e-20 103.2 132 46.2
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 5.7e-20 101.7 131 41.2
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.3e-19 100.5 132 45.5
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.7e-19 100.1 129 41.1
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 2.8e-19 99.4 131 42.0
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 3.7e-19 99.0 135 41.5
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 3.7e-19 99.0 131 42.0
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 6.3e-19 98.2 132 43.9
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 8.2e-19 97.8 132 43.2
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 1.4e-18 97.1 129 41.1
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.8e-18 96.7 129 38.0
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 2.4e-18 96.3 132 39.4
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 2.4e-18 96.3 129 41.9
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 3.1e-18 95.9 132 39.4
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 3.1e-18 95.9 132 41.7
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 7.0e-18 94.7 129 36.4
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 7.0e-18 94.7 129 40.3
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 9.1e-18 94.4 131 38.2
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 1.2e-17 94.0 135 38.5
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 1.6e-17 93.6 131 41.2
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 1.6e-17 93.6 131 39.7
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 2.6e-17 92.8 132 37.9
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.6e-17 92.8 136 41.2
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 3.5e-17 92.4 131 38.9
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 3.5e-17 92.4 132 38.6
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 4.5e-17 92.0 132 38.6
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 4.5e-17 92.0 132 40.9
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 5.9e-17 91.7 140 38.6
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 5.9e-17 91.7 130 39.2
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 5.9e-17 91.7 130 39.2
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 5.9e-17 91.7 131 38.9
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 7.7e-17 91.3 130 38.5
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 7.7e-17 91.3 133 39.8
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 7.7e-17 91.3 131 38.9
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.0e-16 90.9 131 37.4
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.0e-16 90.9 132 37.9
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 1.0e-16 90.9 130 36.2
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.0e-16 90.9 125 39.2
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 1.3e-16 90.5 131 37.4
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 1.3e-16 90.5 131 37.4
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 1.3e-16 90.5 131 37.4
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 1.3e-16 90.5 130 41.5
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.7e-16 90.1 128 39.1
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 1.7e-16 90.1 131 38.2
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 2.2e-16 89.7 131 40.5
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 2.9e-16 89.4 133 39.8
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 3.8e-16 89.0 134 41.0
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.8e-16 89.0 135 36.3
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 5.0e-16 88.6 132 40.9
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.0e-16 88.6 134 39.6
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.0e-16 88.6 134 39.6
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.0e-16 88.6 134 39.6
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.0e-16 88.6 134 39.6
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 5.0e-16 88.6 134 37.3
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 6.5e-16 88.2 128 35.9
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 6.5e-16 88.2 134 40.3
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 6.5e-16 88.2 131 36.6
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 6.5e-16 88.2 134 35.1
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 1.5e-15 87.0 134 37.3
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 1.5e-15 87.0 131 36.6
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 1.9e-15 86.7 131 35.9
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 1.9e-15 86.7 133 34.6
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 1.9e-15 86.7 137 33.6
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 1.9e-15 86.7 131 37.4
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.5e-15 86.3 132 35.6
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 2.5e-15 86.3 134 37.3
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 3.2e-15 85.9 131 37.4
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 3.2e-15 85.9 134 36.6
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 3.2e-15 85.9 131 35.1
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 4.2e-15 85.5 128 33.6
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 4.2e-15 85.5 132 37.1
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.2e-15 85.5 137 38.7
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 4.2e-15 85.5 133 34.6
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 5.5e-15 85.1 127 37.8
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 5.5e-15 85.1 135 35.6
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 5.5e-15 85.1 127 34.6
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 7.2e-15 84.7 133 34.6
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 7.2e-15 84.7 127 37.0
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 7.2e-15 84.7 129 38.0
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 7.2e-15 84.7 134 36.6
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 7.2e-15 84.7 135 38.5
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 7.2e-15 84.7 135 31.9
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 9.4e-15 84.3 132 36.4
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 9.4e-15 84.3 135 37.0
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 9.4e-15 84.3 112 39.3
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 1.2e-14 84.0 133 38.3
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 1.2e-14 84.0 138 36.2
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 1.2e-14 84.0 132 34.8
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 1.2e-14 84.0 130 33.1
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.6e-14 83.6 135 34.8
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 1.6e-14 83.6 132 35.6
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 1.6e-14 83.6 129 35.7
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 1.6e-14 83.6 135 33.3
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 2.1e-14 83.2 134 32.8
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 2.1e-14 83.2 133 33.8
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 2.7e-14 82.8 133 34.6
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 3.6e-14 82.4 134 33.6
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 3.6e-14 82.4 132 34.8
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 3.6e-14 82.4 131 32.8
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 4.7e-14 82.0 131 35.9
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 4.7e-14 82.0 133 36.1
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 4.7e-14 82.0 132 34.8
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 6.1e-14 81.6 130 33.1
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 6.1e-14 81.6 132 34.8
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 1.0e-13 80.9 133 34.6
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.0e-13 80.9 135 35.6
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 1.0e-13 80.9 140 36.4
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 1.8e-13 80.1 127 37.8
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 1.8e-13 80.1 132 35.6
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.8e-13 80.1 132 36.4
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.3e-13 79.7 138 33.3
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.3e-13 79.7 136 33.8
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.3e-13 79.7 134 34.3
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 5.2e-13 78.6 131 32.8
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 5.2e-13 78.6 129 33.3
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 6.7e-13 78.2 136 31.6
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 6.7e-13 78.2 131 35.9
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 6.7e-13 78.2 130 36.2
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.5e-12 77.0 131 32.8
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 2.0e-12 76.6 131 32.8
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.6e-12 76.3 136 32.4
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.6e-12 76.3 129 33.3
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 5.7e-12 75.1 124 33.9
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.2e-09 67.4 118 35.6
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 2.9e-08 62.8 132 28.0
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 3.2e-07 59.3 128 30.5
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 7.2e-07 58.2 135 28.1
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 1.6e-06 57.0 61 49.2


User provided reference genes

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