Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 9.3e-84 313.5 163 100.0
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 7.5e-41 171.0 163 54.0
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 2.5e-36 156.0 167 51.5
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 2.1e-35 152.9 163 50.3
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 4.7e-35 151.8 163 47.9
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 2.3e-34 149.4 167 47.9
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 3.0e-34 149.1 159 52.2
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 5.2e-34 148.3 167 47.3
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.2e-34 148.3 167 49.1
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 5.2e-34 148.3 164 47.6
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 6.8e-34 147.9 164 49.4
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 8.8e-34 147.5 163 49.7
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 1.2e-33 147.1 167 47.9
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 1.2e-33 147.1 165 47.9
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 1.2e-33 147.1 163 47.9
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 1.5e-33 146.7 165 47.9
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 1.5e-33 146.7 163 47.2
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.5e-33 146.7 167 47.3
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 2.0e-33 146.4 166 47.6
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 2.0e-33 146.4 167 47.9
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 2.0e-33 146.4 163 47.9
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 2.0e-33 146.4 163 47.2
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 2.6e-33 146.0 167 48.5
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.6e-33 146.0 167 48.5
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.6e-33 146.0 167 48.5
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 2.6e-33 146.0 167 48.5
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 2.6e-33 146.0 164 48.2
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 4.4e-33 145.2 168 46.4
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 4.4e-33 145.2 167 48.5
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 4.4e-33 145.2 166 45.2
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 5.7e-33 144.8 163 46.0
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 5.7e-33 144.8 167 48.5
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 7.5e-33 144.4 163 46.6
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 7.5e-33 144.4 163 47.2
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 9.8e-33 144.1 159 48.4
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 9.8e-33 144.1 164 47.6
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 9.8e-33 144.1 167 47.9
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 9.8e-33 144.1 167 48.5
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 1.3e-32 143.7 160 46.2
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.7e-32 143.3 164 47.0
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 1.7e-32 143.3 163 48.5
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 2.2e-32 142.9 175 48.0
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 2.8e-32 142.5 166 46.4
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 2.8e-32 142.5 164 46.3
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 3.7e-32 142.1 163 45.4
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 8.3e-32 141.0 167 45.5
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 8.3e-32 141.0 166 46.4
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 8.3e-32 141.0 175 46.9
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 8.3e-32 141.0 163 44.8
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 1.1e-31 140.6 167 45.5
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 1.1e-31 140.6 175 46.3
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 1.4e-31 140.2 166 45.8
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 1.4e-31 140.2 156 48.1
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 1.8e-31 139.8 167 46.1
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 2.4e-31 139.4 164 47.0
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 2.4e-31 139.4 152 50.7
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.4e-31 139.4 169 44.4
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 3.1e-31 139.0 154 49.4
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 3.1e-31 139.0 167 44.9
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 4.1e-31 138.7 167 44.3
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 4.1e-31 138.7 169 43.8
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 4.1e-31 138.7 167 45.5
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 4.1e-31 138.7 164 50.0
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 5.4e-31 138.3 175 46.9
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 5.4e-31 138.3 163 46.6
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 5.4e-31 138.3 169 46.2
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 9.1e-31 137.5 167 46.7
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 9.1e-31 137.5 169 44.4
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 9.1e-31 137.5 167 44.9
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 1.2e-30 137.1 165 46.1
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 2.0e-30 136.3 164 45.7
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 2.7e-30 136.0 164 43.9
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 3.5e-30 135.6 163 45.4
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 4.5e-30 135.2 167 44.3
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 5.9e-30 134.8 167 43.7
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 5.9e-30 134.8 167 43.7
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 5.9e-30 134.8 167 43.7
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 5.9e-30 134.8 193 42.5
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 7.7e-30 134.4 165 43.6
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 7.7e-30 134.4 141 51.8
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.0e-29 134.0 163 43.6
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 1.3e-29 133.7 165 43.6
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 2.3e-29 132.9 167 43.1
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.9e-29 132.5 191 40.3
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 8.6e-29 131.0 168 44.6
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.5e-28 130.2 191 41.4
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 4.2e-28 128.6 164 39.6
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 5.5e-28 128.3 164 39.6
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 7.2e-28 127.9 164 39.6
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 9.5e-28 127.5 164 39.6
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 9.5e-28 127.5 164 39.6
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 1.6e-27 126.7 138 45.7
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 2.1e-27 126.3 157 44.6
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 2.1e-27 126.3 162 43.8
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 2.8e-27 125.9 189 40.2
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 3.6e-27 125.6 199 39.7
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 8.0e-27 124.4 134 47.0
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 8.0e-27 124.4 137 46.7
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 1.0e-26 124.0 156 46.8
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 1.4e-26 123.6 149 40.3
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 2.3e-26 122.9 169 39.1
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 5.2e-26 121.7 123 52.0
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 2.0e-25 119.8 137 43.8
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.4e-25 118.6 167 37.7
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 7.5e-25 117.9 139 43.2
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 7.5e-25 117.9 140 45.7
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 9.8e-25 117.5 167 36.5
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.3e-24 117.1 164 38.4
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 2.2e-24 116.3 136 44.1
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 8.3e-24 114.4 136 40.4
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.1e-23 114.0 167 37.1
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.1e-23 114.0 127 46.5
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 2.4e-23 112.8 174 41.4
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.6e-22 110.2 167 35.9
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 2.0e-22 109.8 155 40.0
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 3.9e-21 105.5 122 47.5
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.9e-20 103.2 117 47.0
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 2.5e-20 102.8 118 44.9
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 4.3e-20 102.1 133 44.4
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 2.3e-18 96.3 133 41.4
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 5.2e-18 95.1 116 44.0
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 6.8e-18 94.7 116 44.8
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 2.0e-17 93.2 112 45.5
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.7e-16 90.1 130 40.8
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 6.4e-16 88.2 120 41.7
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 8.3e-16 87.8 118 39.0
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 8.3e-16 87.8 118 39.0
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.4e-15 87.0 153 34.6
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 1.9e-15 86.7 127 36.2
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 3.5e-14 82.4 124 40.3
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.1e-12 77.4 120 38.3
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 7.3e-12 74.7 89 47.2
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.6e-11 73.6 163 32.5
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.8e-11 72.8 82 46.3
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 1.1e-10 70.9 74 47.3
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 1.8e-10 70.1 64 54.7
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 6.8e-10 68.2 73 43.8
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 6.8e-10 68.2 73 43.8
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 6.8e-10 68.2 73 43.8
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.3e-08 63.9 103 38.8
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.7e-08 62.4 147 29.9
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.4e-07 58.5 97 35.1
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 1.2e-06 57.4 54 55.6


User provided reference genes

Program Settings