Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 4.2e-57 224.6 120 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 3.3e-22 108.6 78 57.7
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 3.3e-22 108.6 77 59.7
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 9.7e-22 107.1 77 57.1
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 9.7e-22 107.1 82 56.1
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.7e-21 106.3 82 56.1
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.7e-21 106.3 81 55.6
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 2.8e-21 105.5 83 56.6
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 2.8e-21 105.5 77 58.4
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.8e-21 105.5 77 57.1
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 3.7e-21 105.1 82 53.7
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 4.8e-21 104.8 82 53.7
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 4.8e-21 104.8 77 57.1
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 6.3e-21 104.4 82 52.4
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 6.3e-21 104.4 77 55.8
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 1.1e-20 103.6 82 57.3
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 1.1e-20 103.6 76 55.3
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 1.4e-20 103.2 87 52.9
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 1.4e-20 103.2 82 52.4
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.4e-20 103.2 82 53.7
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 1.4e-20 103.2 75 57.3
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.8e-20 102.8 82 52.4
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 1.8e-20 102.8 77 53.2
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 2.4e-20 102.4 77 55.8
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 3.1e-20 102.1 82 53.7
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 3.1e-20 102.1 82 52.4
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 3.1e-20 102.1 86 51.2
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 4.1e-20 101.7 82 52.4
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 4.1e-20 101.7 82 52.4
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 4.1e-20 101.7 82 52.4
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 4.1e-20 101.7 77 54.5
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 4.1e-20 101.7 80 55.0
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 4.1e-20 101.7 80 55.0
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 4.1e-20 101.7 80 55.0
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 4.1e-20 101.7 82 52.4
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 4.1e-20 101.7 74 56.8
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 5.3e-20 101.3 82 52.4
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 5.3e-20 101.3 82 52.4
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 5.3e-20 101.3 82 52.4
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 5.3e-20 101.3 77 55.8
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 5.3e-20 101.3 82 52.4
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 5.3e-20 101.3 77 55.8
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 7.0e-20 100.9 77 54.5
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 9.1e-20 100.5 80 55.0
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 9.1e-20 100.5 107 44.9
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 1.2e-19 100.1 82 53.7
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 1.2e-19 100.1 82 51.2
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 1.2e-19 100.1 75 54.7
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 1.2e-19 100.1 77 57.1
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 1.2e-19 100.1 82 56.1
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 1.2e-19 100.1 90 48.9
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 1.6e-19 99.8 82 51.2
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 1.6e-19 99.8 82 51.2
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 1.6e-19 99.8 81 53.1
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 1.6e-19 99.8 75 54.7
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 1.6e-19 99.8 74 56.8
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 1.6e-19 99.8 77 53.2
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 1.6e-19 99.8 75 56.0
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 1.6e-19 99.8 90 47.8
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 1.6e-19 99.8 90 47.8
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 2.0e-19 99.4 81 51.9
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 2.0e-19 99.4 81 51.9
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 2.0e-19 99.4 77 54.5
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 2.0e-19 99.4 85 51.8
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 2.7e-19 99.0 76 56.6
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 2.7e-19 99.0 76 56.6
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 2.7e-19 99.0 82 51.2
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 2.7e-19 99.0 85 51.8
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.7e-19 99.0 80 51.2
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 2.7e-19 99.0 81 55.6
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 2.7e-19 99.0 79 54.4
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 2.7e-19 99.0 80 55.0
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 2.7e-19 99.0 75 53.3
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 3.5e-19 98.6 74 54.1
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 3.5e-19 98.6 82 51.2
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.5e-19 98.2 80 51.2
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 4.5e-19 98.2 75 54.7
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 4.5e-19 98.2 80 51.2
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 4.5e-19 98.2 76 56.6
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 4.5e-19 98.2 90 46.7
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 5.9e-19 97.8 75 54.7
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 7.7e-19 97.4 80 52.5
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 7.7e-19 97.4 90 45.6
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 7.7e-19 97.4 77 54.5
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 7.7e-19 97.4 82 51.2
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 7.7e-19 97.4 79 51.9
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 7.7e-19 97.4 81 50.6
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 7.7e-19 97.4 82 53.7
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 1.0e-18 97.1 81 50.6
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.0e-18 97.1 82 48.8
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.0e-18 97.1 79 51.9
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.0e-18 97.1 74 54.1
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 1.0e-18 97.1 75 53.3
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 1.3e-18 96.7 82 50.0
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 1.7e-18 96.3 81 53.1
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 1.7e-18 96.3 79 50.6
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.7e-18 96.3 75 52.0
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 1.7e-18 96.3 74 52.7
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 2.2e-18 95.9 75 54.7
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 2.9e-18 95.5 80 52.5
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 2.9e-18 95.5 74 52.7
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 3.8e-18 95.1 82 50.0
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 3.8e-18 95.1 75 53.3
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 3.8e-18 95.1 88 46.6
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 3.8e-18 95.1 80 53.8
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 3.8e-18 95.1 80 51.2
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 5.0e-18 94.7 76 55.3
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 5.0e-18 94.7 76 55.3
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 5.0e-18 94.7 74 55.4
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 6.5e-18 94.4 80 51.2
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 8.5e-18 94.0 79 51.9
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 1.1e-17 93.6 75 50.7
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 1.5e-17 93.2 82 50.0
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 1.9e-17 92.8 79 49.4
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 1.6e-16 89.7 86 47.7
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.1e-16 89.4 108 39.8
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.1e-16 89.4 77 50.6
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 4.7e-16 88.2 91 45.1
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 1.0e-15 87.0 77 49.4
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 4.0e-15 85.1 53 62.3
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 3.4e-14 82.0 77 46.8
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 4.1e-12 75.1 55 56.4
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 4.1e-12 75.1 69 49.3
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 4.1e-12 75.1 55 56.4
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 2.7e-11 72.4 53 58.5
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 4.5e-11 71.6 92 39.1
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 4.5e-11 71.6 54 55.6
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 5.9e-11 71.2 82 40.2
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 2.3e-10 69.3 54 55.6
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.1e-08 62.8 115 30.4
MCO15G631 Micromonas commoda HOM05D005372 ORTHO05D006593 3.0e-07 58.9 81 34.6
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 4.0e-07 58.5 84 38.1
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 1.2e-06 57.0 62 41.9
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 5.7e-06 54.7 41 56.1
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 9.8e-06 53.9 44 50.0


User provided reference genes

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