Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 0.0e+00 1995.7 1070 100.0
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.3e-263 913.7 920 55.8
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 4.9e-258 895.2 906 56.4
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 6.4e-258 894.8 922 55.1
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 4.2e-201 706.1 879 45.1
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 4.1e-196 689.5 892 46.4
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 2.5e-193 680.2 919 45.4
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 6.8e-191 672.2 886 44.1
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 4.9e-189 666.0 886 45.1
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 1.1e-185 654.8 888 43.2
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 1.9e-185 654.1 887 43.5
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 3.3e-185 653.3 891 43.9
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 5.6e-185 652.5 883 45.0
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 6.8e-183 645.6 891 42.2
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 1.2e-182 644.8 886 43.0
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 1.2e-182 644.8 908 42.2
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 2.0e-182 644.0 915 43.1
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 2.6e-182 643.7 886 44.6
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 2.6e-182 643.7 869 44.0
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 4.4e-182 642.9 884 43.7
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 4.9e-181 639.4 890 44.2
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 4.9e-181 639.4 866 43.8
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 1.1e-180 638.3 911 41.9
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 1.4e-180 637.9 887 44.0
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 1.8e-180 637.5 907 42.0
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 1.2e-179 634.8 888 43.1
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.6e-179 634.4 884 43.2
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 2.0e-179 634.0 930 42.2
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 2.0e-179 634.0 882 43.0
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 3.5e-179 633.3 885 43.2
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 4.6e-179 632.9 879 44.4
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 2.3e-178 630.6 888 43.0
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 2.3e-178 630.6 891 43.5
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 3.9e-178 629.8 802 46.6
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 3.9e-178 629.8 883 43.8
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 3.9e-178 629.8 892 42.4
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 3.9e-178 629.8 912 41.8
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 6.6e-178 629.0 893 42.0
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 6.6e-178 629.0 892 42.4
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 1.1e-177 628.2 869 42.0
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.5e-177 627.9 887 42.5
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.9e-177 627.5 884 43.3
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 1.9e-177 627.5 890 42.8
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 5.6e-177 625.9 891 41.6
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 7.3e-177 625.5 886 43.3
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 2.1e-176 624.0 892 42.6
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 2.1e-176 624.0 892 42.3
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 6.2e-176 622.5 895 43.2
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 8.0e-176 622.1 891 42.4
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 1.8e-175 620.9 886 42.9
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 1.8e-175 620.9 893 41.7
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 2.3e-175 620.5 891 42.3
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 2.3e-175 620.5 891 42.3
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 4.0e-175 619.8 896 42.0
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 3.4e-174 616.7 889 42.0
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 4.4e-174 616.3 954 40.8
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 5.8e-174 615.9 879 42.1
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 2.2e-173 614.0 889 43.1
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 2.9e-173 613.6 889 41.7
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 4.9e-173 612.8 885 42.8
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 6.4e-173 612.5 884 42.5
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 4.1e-172 609.8 886 41.4
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 3.5e-171 606.7 889 41.1
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 4.6e-171 606.3 917 40.0
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 4.6e-171 606.3 893 41.0
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 6.0e-171 605.9 888 41.8
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 2.3e-170 604.0 889 41.1
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 3.9e-170 603.2 911 40.4
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 1.1e-169 601.7 917 41.9
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 1.9e-169 600.9 894 40.9
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 1.9e-169 600.9 897 41.0
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 1.9e-169 600.9 887 41.7
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 4.3e-169 599.7 914 41.8
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 2.1e-168 597.4 881 40.9
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 4.0e-167 593.2 914 41.1
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 8.9e-167 592.0 890 41.6
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 2.0e-166 590.9 902 41.1
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 2.0e-166 590.9 887 41.4
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 3.4e-166 590.1 893 41.4
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 4.4e-166 589.7 882 40.4
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 1.7e-165 587.8 893 41.1
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.9e-165 587.0 892 39.9
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 1.9e-164 584.3 893 40.1
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.1e-163 580.9 889 40.0
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 7.8e-163 578.9 885 40.9
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 7.8e-163 578.9 912 39.8
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.7e-162 577.8 884 41.4
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 4.3e-161 573.2 890 40.2
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 9.2e-156 555.4 800 42.1
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 1.1e-153 548.5 820 41.0
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 9.6e-153 545.4 986 39.4
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 2.4e-151 540.8 770 40.9
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 2.4e-151 540.8 783 42.1
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 9.9e-150 535.4 897 38.9
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 2.9e-149 533.9 893 37.7
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 1.1e-145 521.9 762 41.1
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 3.4e-142 510.4 898 38.2
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 4.9e-141 506.5 680 45.3
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 3.2e-140 503.8 889 38.4
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 3.5e-139 500.4 931 36.4
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 1.1e-135 488.8 764 39.9
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 3.4e-134 483.8 664 43.8
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 7.4e-129 466.1 610 44.1
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 4.5e-126 456.8 555 44.5
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 1.2e-118 432.2 555 43.4
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 2.2e-117 427.9 1000 32.7
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 8.7e-114 416.0 963 34.5
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 5.2e-98 363.6 480 42.7
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 4.8e-96 357.1 730 35.2
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 4.7e-83 313.9 818 30.9
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 9.1e-79 299.7 491 40.3
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.2e-62 246.1 400 43.0
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 1.6e-62 245.7 389 44.0
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.2e-56 225.3 358 39.1
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 4.9e-56 224.2 446 37.9
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.3e-52 211.5 270 43.0
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 8.9e-50 203.4 339 43.4
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.1e-47 196.4 181 55.8
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 1.1e-44 186.4 317 36.0
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 9.5e-44 183.3 266 37.2
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.6e-43 182.6 265 42.6
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 4.7e-43 181.0 351 39.3
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.2e-41 176.4 167 54.5
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 2.3e-37 162.2 279 39.8
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 3.0e-37 161.8 475 34.1
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 3.6e-35 154.8 221 39.4
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 9.9e-33 146.7 410 34.1
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 5.6e-28 131.0 153 45.1
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 9.0e-26 123.6 153 43.8
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 1.6e-22 112.8 128 46.1
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 1.5e-20 106.3 136 44.1
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 4.8e-19 101.3 128 43.0
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 1.8e-18 99.4 95 58.9
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 2.4e-18 99.0 115 50.4
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 3.4e-17 95.1 151 44.4
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 1.7e-16 92.8 110 45.5
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 4.2e-15 88.2 128 45.3
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 5.5e-15 87.8 122 41.0
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 9.3e-15 87.0 204 37.3
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 4.6e-14 84.7 164 41.5
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 4.6e-14 84.7 59 71.2
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.9e-13 81.6 205 28.3
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 6.7e-13 80.9 143 37.1
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.6e-11 76.3 65 60.0
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 4.6e-06 58.2 65 46.2
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 6.0e-06 57.8 68 48.5


User provided reference genes

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