Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.2e-116 423.3 239 100.0
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.5e-61 239.6 171 71.3
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 4.1e-56 222.2 158 72.2
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 3.3e-53 212.6 156 67.9
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 6.2e-52 208.4 172 63.4
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 1.9e-48 196.8 168 58.9
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 4.6e-47 192.2 119 77.3
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 3.9e-46 189.1 167 56.9
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 5.1e-46 188.7 167 56.3
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 6.6e-46 188.3 168 56.5
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.9e-45 186.8 167 55.7
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 1.9e-45 186.8 166 55.4
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 2.5e-45 186.4 177 56.5
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 2.5e-45 186.4 167 54.5
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 3.3e-45 186.0 161 58.4
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.3e-45 185.7 167 56.9
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.3e-45 185.7 167 55.7
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 5.6e-45 185.3 171 52.6
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 9.6e-45 184.5 167 55.7
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 1.6e-44 183.7 167 55.1
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 8.1e-44 181.4 156 57.1
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.1e-43 181.0 170 53.5
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 1.8e-43 180.3 168 55.4
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 3.1e-43 179.5 165 55.2
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 5.2e-43 178.7 170 52.9
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 6.9e-43 178.3 142 64.1
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 1.5e-42 177.2 167 53.9
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 2.0e-42 176.8 170 53.5
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 2.6e-42 176.4 167 52.7
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 4.4e-42 175.6 170 52.4
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 5.8e-42 175.3 167 53.9
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 5.8e-42 175.3 170 52.4
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 5.8e-42 175.3 167 53.9
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 7.6e-42 174.9 167 53.3
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 7.6e-42 174.9 136 64.0
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 7.6e-42 174.9 167 53.3
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 7.6e-42 174.9 170 52.4
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 1.7e-41 173.7 167 53.3
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 2.9e-41 172.9 142 59.2
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 2.9e-41 172.9 168 51.8
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 3.8e-41 172.6 158 53.2
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 4.9e-41 172.2 156 54.5
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 6.4e-41 171.8 138 62.3
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 6.4e-41 171.8 131 61.8
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 8.4e-41 171.4 124 65.3
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 8.4e-41 171.4 160 55.6
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 2.4e-40 169.9 167 51.5
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 2.4e-40 169.9 155 54.2
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 4.2e-40 169.1 167 52.7
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 5.4e-40 168.7 132 62.1
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 5.4e-40 168.7 168 53.6
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 5.4e-40 168.7 123 64.2
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 7.1e-40 168.3 162 54.9
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 7.1e-40 168.3 159 52.8
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 1.2e-39 167.5 129 62.0
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 1.2e-39 167.5 129 61.2
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 1.2e-39 167.5 167 51.5
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.2e-39 167.5 132 62.1
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.2e-39 167.5 160 55.0
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.2e-39 167.5 169 48.5
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.2e-39 167.5 153 54.2
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 2.1e-39 166.8 129 62.8
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 2.1e-39 166.8 132 61.4
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.1e-39 166.8 132 61.4
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 2.1e-39 166.8 132 60.6
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 2.1e-39 166.8 168 53.0
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 2.1e-39 166.8 168 52.4
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 2.7e-39 166.4 148 54.7
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 2.7e-39 166.4 148 54.7
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 2.7e-39 166.4 148 54.7
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 3.5e-39 166.0 147 53.7
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 3.5e-39 166.0 153 55.6
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 3.5e-39 166.0 150 54.0
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 3.5e-39 166.0 167 51.5
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 4.6e-39 165.6 152 50.0
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 4.6e-39 165.6 144 52.8
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 4.6e-39 165.6 129 60.5
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 6.0e-39 165.2 147 53.7
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 7.8e-39 164.9 132 60.6
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 1.0e-38 164.5 149 54.4
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.0e-38 164.5 132 60.6
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 1.0e-38 164.5 129 59.7
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.3e-38 164.1 158 51.9
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.3e-38 164.1 141 59.6
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 1.7e-38 163.7 147 53.7
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 1.7e-38 163.7 144 53.5
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 2.3e-38 163.3 144 52.1
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 2.3e-38 163.3 147 53.7
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 2.3e-38 163.3 132 58.3
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 3.0e-38 162.9 124 62.9
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 3.9e-38 162.5 134 55.2
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.9e-38 162.5 132 59.8
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 5.1e-38 162.2 140 59.3
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 6.6e-38 161.8 123 61.0
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 6.6e-38 161.8 129 59.7
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 6.6e-38 161.8 132 58.3
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 6.6e-38 161.8 131 58.0
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 8.7e-38 161.4 133 57.1
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 1.5e-37 160.6 132 57.6
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.9e-37 160.2 132 56.8
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 2.5e-37 159.8 167 46.1
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 3.3e-37 159.5 132 59.1
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 4.3e-37 159.1 172 48.3
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 7.3e-37 158.3 132 54.5
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 9.6e-37 157.9 142 54.2
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 9.6e-37 157.9 169 47.9
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 9.6e-37 157.9 132 57.6
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 9.6e-37 157.9 136 55.9
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 1.3e-36 157.5 162 50.0
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 1.3e-36 157.5 132 57.6
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 1.3e-36 157.5 109 67.0
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.3e-36 157.5 133 58.6
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 1.6e-36 157.1 131 59.5
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 1.6e-36 157.1 143 55.2
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 1.6e-36 157.1 132 57.6
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 4.8e-36 155.6 153 51.0
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 6.2e-36 155.2 127 54.3
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 6.2e-36 155.2 126 60.3
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 6.2e-36 155.2 126 57.9
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 8.1e-36 154.8 158 50.0
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 8.1e-36 154.8 132 58.3
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 8.1e-36 154.8 132 58.3
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.1e-35 154.5 143 52.4
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.1e-35 154.5 132 54.5
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 1.4e-35 154.1 160 49.4
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.4e-35 154.1 173 46.2
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.4e-35 154.1 132 56.1
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 2.4e-35 153.3 139 51.1
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.4e-35 153.3 133 54.9
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.4e-35 153.3 133 54.9
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 3.1e-35 152.9 143 52.4
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 4.0e-35 152.5 171 48.0
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 4.0e-35 152.5 136 52.2
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 5.3e-35 152.1 137 54.7
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 9.0e-35 151.4 169 46.7
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 1.2e-34 151.0 132 56.8
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.5e-34 150.6 135 53.3
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 2.6e-34 149.8 130 54.6
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 2.6e-34 149.8 130 54.6
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 2.6e-34 149.8 130 53.8
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 7.6e-34 148.3 122 56.6
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 7.6e-34 148.3 163 50.3
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.3e-33 147.5 163 48.5
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.7e-33 147.1 132 54.5
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 2.9e-33 146.4 167 47.9
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 2.9e-33 146.4 153 50.3
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 3.8e-33 146.0 163 49.1
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.9e-33 145.6 132 53.8
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 6.4e-33 145.2 163 48.5
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 8.4e-33 144.8 163 47.9
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 1.1e-32 144.4 145 51.0
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 1.1e-32 144.4 154 47.4
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.4e-32 144.1 169 49.1
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 2.4e-32 143.3 110 60.9
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 4.2e-32 142.5 118 55.1
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.0e-30 137.9 134 53.0
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.0e-30 136.3 183 41.5
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 3.9e-30 136.0 96 65.6
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 1.1e-29 134.4 161 46.6
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.5e-29 133.3 129 53.5
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 8.1e-28 128.3 106 57.5
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 7.6e-26 121.7 167 41.9
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 2.2e-25 120.2 160 41.2
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 7.9e-23 111.7 115 50.4
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.9e-21 107.1 150 40.7
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.3e-20 104.4 132 43.9
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 2.8e-20 103.2 140 43.6
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.4e-19 100.1 84 61.9
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 5.3e-19 99.0 132 42.4
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 4.5e-18 95.9 154 40.3
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 4.5e-18 95.9 154 40.3
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 7.6e-18 95.1 75 60.0
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 2.9e-17 93.2 90 53.3
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.4e-16 90.9 200 31.0
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 2.2e-12 77.0 57 61.4
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 2.8e-12 76.6 80 47.5
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 1.5e-10 70.9 49 67.3
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 5.5e-08 62.4 48 54.2


User provided reference genes

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