Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 6.5e-224 780.4 393 100.0
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 9.8e-79 298.1 262 56.1
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 3.7e-78 296.2 220 64.1
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.7e-70 270.8 266 51.5
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 7.0e-69 265.4 264 48.1
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 9.2e-69 265.0 265 54.3
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 9.2e-69 265.0 256 51.2
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 6.6e-67 258.8 260 50.8
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 1.9e-66 257.3 256 51.2
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.5e-66 256.9 264 52.3
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 3.3e-66 256.5 256 52.3
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.3e-66 256.5 264 52.3
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 4.3e-66 256.1 256 52.3
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 9.5e-66 255.0 255 51.4
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 9.5e-66 255.0 261 51.3
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.2e-65 254.6 263 50.2
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 1.2e-65 254.6 259 51.0
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 1.2e-65 254.6 262 50.8
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.6e-65 254.2 225 56.4
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 2.1e-65 253.8 225 56.0
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.8e-65 253.4 264 51.1
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 2.8e-65 253.4 276 49.3
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 3.6e-65 253.1 263 51.0
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 8.0e-65 251.9 256 50.4
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 1.4e-64 251.1 258 50.4
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.4e-64 251.1 255 50.6
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 3.0e-64 250.0 221 53.8
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 4.0e-64 249.6 255 50.2
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 5.2e-64 249.2 260 49.2
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 5.2e-64 249.2 258 50.8
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 6.8e-64 248.8 256 51.6
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 6.8e-64 248.8 255 51.0
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 1.2e-63 248.1 263 50.6
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.5e-63 247.7 221 53.4
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 1.5e-63 247.7 261 48.3
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 2.0e-63 247.3 257 51.4
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 2.6e-63 246.9 265 49.1
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 2.6e-63 246.9 258 51.2
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 3.4e-63 246.5 257 51.8
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 3.4e-63 246.5 256 47.3
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 3.4e-63 246.5 257 51.0
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 7.5e-63 245.4 258 48.4
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 9.8e-63 245.0 281 48.8
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.3e-62 244.6 263 50.6
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 1.3e-62 244.6 259 50.2
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 1.3e-62 244.6 273 48.0
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 1.7e-62 244.2 259 50.2
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.9e-62 243.4 263 46.4
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.9e-62 243.4 267 48.7
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.9e-62 243.4 215 55.3
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 2.9e-62 243.4 259 51.4
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 3.7e-62 243.0 256 51.6
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 3.7e-62 243.0 222 53.2
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 3.7e-62 243.0 255 49.0
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 6.4e-62 242.3 255 51.4
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 8.3e-62 241.9 255 48.6
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 8.3e-62 241.9 256 48.4
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 8.3e-62 241.9 220 53.6
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 1.1e-61 241.5 217 54.8
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 2.4e-61 240.4 257 51.0
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 3.2e-61 240.0 258 49.6
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 3.2e-61 240.0 255 47.5
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 3.2e-61 240.0 266 45.5
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 4.1e-61 239.6 251 51.4
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 4.1e-61 239.6 259 49.4
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 4.1e-61 239.6 221 52.9
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.0e-60 237.3 259 49.4
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 2.7e-60 236.9 264 50.0
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 3.5e-60 236.5 259 46.7
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 3.5e-60 236.5 258 50.4
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 6.0e-60 235.7 219 52.5
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 1.3e-59 234.6 280 46.1
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 2.3e-59 233.8 291 45.4
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 2.3e-59 233.8 261 49.4
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 3.9e-59 233.0 258 46.9
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 5.0e-59 232.6 258 48.4
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 6.6e-59 232.3 261 47.9
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 8.6e-59 231.9 291 45.0
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.1e-58 231.5 257 47.9
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.5e-58 231.1 221 52.0
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 4.3e-58 229.6 258 47.7
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 4.3e-58 229.6 264 46.6
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 9.5e-58 228.4 220 54.5
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.2e-57 228.0 259 47.5
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.6e-57 227.6 258 47.7
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 4.7e-57 226.1 221 50.2
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 6.2e-57 225.7 228 53.5
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 6.2e-57 225.7 283 43.5
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.4e-56 224.6 302 43.4
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.8e-56 224.2 257 47.1
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.8e-56 224.2 220 50.0
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 2.3e-56 223.8 257 44.0
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 2.3e-56 223.8 288 43.4
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 4.0e-56 223.0 283 44.5
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 5.2e-56 222.6 258 47.3
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.2e-55 221.5 258 46.9
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 2.0e-55 220.7 291 43.0
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 5.8e-55 219.2 257 46.3
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 5.8e-55 219.2 354 40.7
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 7.5e-55 218.8 257 42.8
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 7.5e-55 218.8 304 41.4
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 7.5e-55 218.8 294 42.5
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 9.8e-55 218.4 292 43.5
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 9.8e-55 218.4 298 43.6
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 2.2e-54 217.2 257 46.7
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 2.9e-54 216.9 261 46.4
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 4.9e-54 216.1 259 42.9
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 4.9e-54 216.1 259 42.9
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 4.9e-54 216.1 259 42.9
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 6.4e-54 215.7 257 43.2
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 6.4e-54 215.7 261 43.7
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 8.3e-54 215.3 258 43.4
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 8.3e-54 215.3 258 43.4
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.9e-53 214.2 258 43.4
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 3.2e-53 213.4 291 41.9
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.6e-52 211.1 267 46.4
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 6.0e-52 209.1 199 54.8
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 1.0e-51 208.4 194 56.2
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.3e-51 208.0 216 49.5
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 1.3e-51 208.0 327 39.8
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.7e-51 207.6 339 38.6
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 3.9e-51 206.5 232 45.3
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 1.9e-50 204.1 216 47.7
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 4.3e-50 203.0 215 47.4
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 7.3e-50 202.2 208 48.1
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 1.2e-49 201.4 208 48.6
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.2e-49 201.4 208 48.6
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 2.1e-49 200.7 208 47.6
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 4.7e-49 199.5 223 46.2
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 6.2e-49 199.1 208 48.1
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 8.1e-49 198.7 202 49.0
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.1e-48 196.8 208 49.0
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.2e-47 194.9 216 47.2
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 3.4e-47 193.4 195 51.3
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 4.4e-47 193.0 174 55.7
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.2e-46 190.7 195 50.8
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 6.4e-46 189.1 216 46.8
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 7.3e-42 175.6 224 42.9
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 2.4e-40 170.6 301 37.5
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 4.9e-38 162.9 236 42.4
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 2.7e-36 157.1 273 34.4
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 2.3e-35 154.1 218 41.3
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 3.0e-35 153.7 171 49.7
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 6.6e-35 152.5 139 53.2
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.4e-32 144.8 137 51.8
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 9.0e-32 142.1 141 50.4
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.4e-29 134.8 145 46.9
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.4e-29 134.8 195 39.0
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 5.4e-29 132.9 133 54.1
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 5.4e-29 132.9 123 54.5
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 7.1e-29 132.5 365 29.6
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 3.0e-27 127.1 142 43.0
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 3.0e-27 127.1 118 57.6
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 3.0e-27 127.1 118 54.2
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 4.3e-26 123.2 118 56.8
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 9.6e-26 122.1 240 33.3
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 2.1e-25 120.9 118 55.9
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 9.9e-23 112.1 142 42.3
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 1.3e-22 111.7 98 50.0
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 8.7e-19 99.0 141 39.0
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 6.9e-16 89.4 76 57.9
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 5.8e-15 86.3 80 55.0
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 2.2e-14 84.3 91 44.0
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 1.4e-13 81.6 179 38.0
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 3.5e-12 77.0 150 34.7
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.5e-10 71.6 89 42.7
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 9.6e-10 68.9 164 32.9
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 1.3e-09 68.6 83 41.0
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.8e-08 64.7 90 42.2
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 6.9e-08 62.8 171 27.5
AagrBONN_evm.TU.Sc2ySwM_228.444 Anthoceros agrestis HOM05D006652 ORTHO05D008645 1.2e-07 62.0 161 28.0
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 2.2e-06 57.8 205 25.4
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 2.2e-06 57.8 205 25.4


User provided reference genes

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