Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0155 Marchantia polymorpha HOM05D001567 ORTHO05D001409 5.9e-68 260.8 134 100.0
Mapoly0019s0176 Marchantia polymorpha HOM05D001567 ORTHO05D001409 1.2e-09 67.0 41 61.0
Lsat_1_v5_gn_7_14220 Lactuca sativa HOM05D001567 ORTHO05D001409 2.4e-08 62.8 57 47.4
Pp3c11_1170 Physcomitrium patens HOM05D001567 ORTHO05D001409 2.4e-08 62.8 41 58.5
HanXRQChr15g0470761 Helianthus annuus HOM05D001567 ORTHO05D001409 3.1e-08 62.4 54 51.9
HanXRQChr16g0516871 Helianthus annuus HOM05D001567 ORTHO05D001409 3.1e-08 62.4 51 49.0
Glyma.15G112600 Glycine max HOM05D001567 ORTHO05D001409 4.0e-08 62.0 51 49.0
Hma1.2p1_0445F.1_g154300 Hydrangea macrophylla HOM05D001567 ORTHO05D001409 6.8e-08 61.2 51 47.1
Solyc03g031830.1 Solanum lycopersicum HOM05D001567 ORTHO05D001409 8.9e-08 60.8 53 47.2
Sopen03g005690 Solanum pennellii HOM05D001567 ORTHO05D001409 8.9e-08 60.8 53 47.2
CiPaw.10G075300 Carya illinoinensis HOM05D001567 ORTHO05D001409 1.2e-07 60.5 51 49.0
Pp3c7_25100 Physcomitrium patens HOM05D001567 ORTHO05D001409 1.2e-07 60.5 43 53.5
Ah.09g234460 Amaranthus hybridus HOM05D001567 ORTHO05D001409 1.5e-07 60.1 54 42.6
CSS0012763 Camellia sinensis var. sinensis HOM05D001567 ORTHO05D001409 1.5e-07 60.1 41 56.1
AUR62012764 Chenopodium quinoa HOM05D001567 ORTHO05D001409 1.5e-07 60.1 49 49.0
VMungo0540G0409 Vigna mungo HOM05D001567 ORTHO05D001409 1.5e-07 60.1 51 47.1
Gohir.D05G177000 Gossypium hirsutum HOM05D001567 ORTHO05D001409 2.0e-07 59.7 58 44.8
PGR042G2269 Punica granatum HOM05D001567 ORTHO05D001409 2.0e-07 59.7 41 56.1
Sed0027499 Sechium edule HOM05D001567 ORTHO05D001409 2.0e-07 59.7 51 47.1
BcaB01g02609 Brassica carinata HOM05D001567 ORTHO05D001409 2.6e-07 59.3 49 46.9
C03p36140 Brassica napus HOM05D001567 ORTHO05D001409 2.6e-07 59.3 49 46.9
BolC3t15924H Brassica oleracea HOM05D001567 ORTHO05D001409 2.6e-07 59.3 49 46.9
BraA03t12177Z Brassica rapa HOM05D001567 ORTHO05D001409 2.6e-07 59.3 49 46.9
Cpa.g.c45104 Carica papaya HOM05D001567 ORTHO05D001409 2.6e-07 59.3 51 49.0
TAR626G0005 Trochodendron aralioides HOM05D001567 ORTHO05D001409 2.6e-07 59.3 48 47.9
VMungo1215G2300 Vigna mungo HOM05D001567 ORTHO05D001409 2.6e-07 59.3 52 48.1
A03p29870 Brassica napus HOM05D001567 ORTHO05D001409 3.4e-07 58.9 49 46.9
CsaV3_6G048640 Cucumis sativus L. HOM05D001567 ORTHO05D001409 3.4e-07 58.9 50 48.0
Lj1P781T37 Lonicera japonica HOM05D001567 ORTHO05D001409 3.4e-07 58.9 50 46.0
A03p67880 Brassica napus HOM05D001567 ORTHO05D001409 4.4e-07 58.5 41 51.2
Cpa.g.sc132.26 Carica papaya HOM05D001567 ORTHO05D001409 4.4e-07 58.5 44 50.0
Gohir.A05G174000 Gossypium hirsutum HOM05D001567 ORTHO05D001409 4.4e-07 58.5 58 43.1
Gorai.009G182400 Gossypium raimondii HOM05D001567 ORTHO05D001409 4.4e-07 58.5 58 44.8
Phvul.003G082200 Phaseolus vulgaris HOM05D001567 ORTHO05D001409 4.4e-07 58.5 51 45.1
SEGI_41080 Sequoiadendron giganteum HOM05D001567 ORTHO05D001409 4.4e-07 58.5 49 49.0
AT1G62370 Arabidopsis thaliana HOM05D001567 ORTHO05D001409 5.8e-07 58.2 41 51.2
BcaC02g10473 Brassica carinata HOM05D001567 ORTHO05D001409 5.8e-07 58.2 41 51.2
BcaC06g31897 Brassica carinata HOM05D001567 ORTHO05D001409 5.8e-07 58.2 41 51.2
C04p28440 Brassica napus HOM05D001567 ORTHO05D001409 5.8e-07 58.2 41 51.2
BolC4t24391H Brassica oleracea HOM05D001567 ORTHO05D001409 5.8e-07 58.2 41 51.2
BraA01t02682Z Brassica rapa HOM05D001567 ORTHO05D001409 5.8e-07 58.2 41 51.2
CARHR049550 Cardamine hirsuta HOM05D001567 ORTHO05D001409 5.8e-07 58.2 41 51.2
MELO3C007424.2 Cucumis melo HOM05D001567 ORTHO05D001409 5.8e-07 58.2 50 46.0
Lsat_1_v5_gn_4_63001 Lactuca sativa HOM05D001567 ORTHO05D001409 5.8e-07 58.2 43 51.2
PSO541G3517 Papaver somniferum HOM05D001567 ORTHO05D001409 5.8e-07 58.2 53 47.2
PSO675G9389 Papaver somniferum HOM05D001567 ORTHO05D001409 5.8e-07 58.2 53 47.2
Sp2g02230 Schrenkiella parvula HOM05D001567 ORTHO05D001409 5.8e-07 58.2 41 51.2
SMO141G0028 Selaginella moellendorffii HOM05D001567 ORTHO05D001409 5.8e-07 58.2 49 42.9
TAR629G0424 Trochodendron aralioides HOM05D001567 ORTHO05D001409 5.8e-07 58.2 47 46.8
Aqoxy1G02913 Aquilegia oxysepala HOM05D001567 ORTHO05D001409 7.6e-07 57.8 47 46.8
BcaC01g04571 Brassica carinata HOM05D001567 ORTHO05D001409 7.6e-07 57.8 49 44.9
Duzib211G0626 Durio zibethinus HOM05D001567 ORTHO05D001409 7.6e-07 57.8 41 56.1
Glyma.17G009900 Glycine max HOM05D001567 ORTHO05D001409 7.6e-07 57.8 50 48.0
Lalb_Chr15g0087831 Lupinus albus HOM05D001567 ORTHO05D001409 7.6e-07 57.8 51 47.1
TWI63G1699 Tripterygium wilfordii HOM05D001567 ORTHO05D001409 7.6e-07 57.8 41 56.1
Zm00001eb317640 Zea mays HOM05D001567 ORTHO05D001409 7.6e-07 57.8 38 57.9
Aa31LG9G9940 Aethionema arabicum HOM05D001567 ORTHO05D001409 9.9e-07 57.4 44 50.0
CARHR229140 Cardamine hirsuta HOM05D001567 ORTHO05D001409 9.9e-07 57.4 53 43.4
Cfa000139 Carpinus fangiana HOM05D001567 ORTHO05D001409 9.9e-07 57.4 51 47.1
Duzib192G0402 Durio zibethinus HOM05D001567 ORTHO05D001409 9.9e-07 57.4 41 53.7
Duzib235G0464 Durio zibethinus HOM05D001567 ORTHO05D001409 9.9e-07 57.4 51 47.1
Oeu003161.1 Olea europaea HOM05D001567 ORTHO05D001409 9.9e-07 57.4 41 56.1
Sp6g04740 Schrenkiella parvula HOM05D001567 ORTHO05D001409 9.9e-07 57.4 41 53.7
THA.LOC104813470 Tarenaya hassleriana HOM05D001567 ORTHO05D001409 9.9e-07 57.4 43 51.2
TAR020G0004 Trochodendron aralioides HOM05D001567 ORTHO05D001409 9.9e-07 57.4 47 46.8
Zm00001eb102340 Zea mays HOM05D001567 ORTHO05D001409 9.9e-07 57.4 38 57.9
Actinidia02333 Actinidia chinensis HOM05D001567 ORTHO05D001409 1.3e-06 57.0 42 52.4
Aa31LG2G80 Aethionema arabicum HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 48.8
Aa31LG6G4360 Aethionema arabicum HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 53.7
AL7G31380 Arabidopsis lyrata HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 53.7
AT4G22250 Arabidopsis thaliana HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 53.7
BcaC09g51147 Brassica carinata HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 53.7
BcaNung01702 Brassica carinata HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 53.7
BcaNung03750 Brassica carinata HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 53.7
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 1.3e-06 57.0 41 53.7
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 1.3e-06 57.0 41 53.7
BraA01t01305Z Brassica rapa HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 53.7
Carub.0002s0261 Capsella rubella HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 48.8
Carub.0007s1907 Capsella rubella HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 53.7
Ciclev10017636m.g Citrus clementina HOM05D001567 ORTHO05D001409 1.3e-06 57.0 47 44.7
COL.COLO4_31845 Corchorus olitorius HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 53.7
Haze_06885 Corylus avellana HOM05D001567 ORTHO05D001409 1.3e-06 57.0 51 47.1
MELO3C014436.2 Cucumis melo HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 53.7
CsaV3_6G037770 Cucumis sativus L. HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 53.7
Duzib138G0709 Durio zibethinus HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 53.7
Thhalv10023694m.g Eutrema salsugineum HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 48.8
Thhalv10026221m.g Eutrema salsugineum HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 53.7
Glyma.09G008200 Glycine max HOM05D001567 ORTHO05D001409 1.3e-06 57.0 47 46.8
Nitab4.5_0004821g0030 Nicotiana tabacum HOM05D001567 ORTHO05D001409 1.3e-06 57.0 51 45.1
Phvul.006G145000 Phaseolus vulgaris HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 53.7
Potri.004G003101 Populus trichocarpa HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 53.7
QL03p008070 Quercus lobata HOM05D001567 ORTHO05D001409 1.3e-06 57.0 44 50.0
QL05p070193 Quercus lobata HOM05D001567 ORTHO05D001409 1.3e-06 57.0 44 50.0
Sabra04G0001700 Salix brachista HOM05D001567 ORTHO05D001409 1.3e-06 57.0 41 53.7
GSVIVG01030507001 Vitis vinifera HOM05D001567 ORTHO05D001409 1.3e-06 57.0 52 46.2
Lj4g0027518 Lotus japonicus HOM05D001567 ORTHO05D001409 1.7e-06 56.6 44 50.0
MD10G1328000 Malus domestica HOM05D001567 ORTHO05D001409 1.7e-06 56.6 51 43.1
Medtr4g132760 Medicago truncatula HOM05D001567 ORTHO05D001409 1.7e-06 56.6 44 50.0
Nitab4.5_0011973g0020 Nicotiana tabacum HOM05D001567 ORTHO05D001409 1.7e-06 56.6 52 42.3
Oeu007157.1 Olea europaea HOM05D001567 ORTHO05D001409 1.7e-06 56.6 41 53.7
Peaxi162Scf00977g00002 Petunia axillaris HOM05D001567 ORTHO05D001409 1.7e-06 56.6 41 53.7
Psat4g005200 Pisum sativum HOM05D001567 ORTHO05D001409 1.7e-06 56.6 44 50.0
Potri.014G158900 Populus trichocarpa HOM05D001567 ORTHO05D001409 1.7e-06 56.6 42 52.4
Prupe.4G013900 Prunus persica HOM05D001567 ORTHO05D001409 1.7e-06 56.6 41 51.2
Solyc07g049400.1 Solanum lycopersicum HOM05D001567 ORTHO05D001409 1.7e-06 56.6 41 51.2
Sopen07g024740 Solanum pennellii HOM05D001567 ORTHO05D001409 1.7e-06 56.6 41 51.2
PGSC0003DMG400000688 Solanum tuberosum HOM05D001567 ORTHO05D001409 1.7e-06 56.6 41 51.2
PGSC0003DMG400024061 Solanum tuberosum HOM05D001567 ORTHO05D001409 1.7e-06 56.6 41 53.7
THA.LOC104809475 Tarenaya hassleriana HOM05D001567 ORTHO05D001409 1.7e-06 56.6 41 48.8
TPR.G20895 Trifolium pratense HOM05D001567 ORTHO05D001409 1.7e-06 56.6 44 50.0
vmacro03659 Vaccinium macrocarpon HOM05D001567 ORTHO05D001409 1.7e-06 56.6 41 53.7
CANSAT56G0685 Cannabis sativa HOM05D001567 ORTHO05D001409 2.2e-06 56.2 41 51.2
CANSAT56G1550 Cannabis sativa HOM05D001567 ORTHO05D001409 2.2e-06 56.2 41 51.2
Carub.0006s3204 Capsella rubella HOM05D001567 ORTHO05D001409 2.2e-06 56.2 41 51.2
Ca_21058_v3 Cicer arietinum L. HOM05D001567 ORTHO05D001409 2.2e-06 56.2 44 47.7
Ciclev10016774m.g Citrus clementina HOM05D001567 ORTHO05D001409 2.2e-06 56.2 44 50.0
Thhalv10029329m.g Eutrema salsugineum HOM05D001567 ORTHO05D001409 2.2e-06 56.2 44 47.7
Hma1.2p1_0660F.1_g197410 Hydrangea macrophylla HOM05D001567 ORTHO05D001409 2.2e-06 56.2 51 47.1
Hma1.2p1_2753F.1_g327910 Hydrangea macrophylla HOM05D001567 ORTHO05D001409 2.2e-06 56.2 51 47.1
Manes.12G069400 Manihot esculenta HOM05D001567 ORTHO05D001409 2.2e-06 56.2 41 51.2
Manes.17G022526 Manihot esculenta HOM05D001567 ORTHO05D001409 2.2e-06 56.2 45 48.9
Nn1g03375 Nelumbo nucifera HOM05D001567 ORTHO05D001409 2.2e-06 56.2 51 43.1
Solyc02g081180.2 Solanum lycopersicum HOM05D001567 ORTHO05D001409 2.2e-06 56.2 50 44.0
Thecc.06G229600 Theobroma cacao HOM05D001567 ORTHO05D001409 2.2e-06 56.2 41 51.2
HPP92_009969 Vanilla planifolia HOM05D001567 ORTHO05D001409 2.2e-06 56.2 39 53.8
AL6G47750 Arabidopsis lyrata HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
AT4G03965 Arabidopsis thaliana HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
arahy.Tifrunner.gnm1.ann1.IL02F1 Arachis hypogaea HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 53.7
arahy.Tifrunner.gnm1.ann1.KST8W5 Arachis hypogaea HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 53.7
BcaNung00803 Brassica carinata HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
A03p53380 Brassica napus HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
BraA03t14405Z Brassica rapa HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
CANSAT64G2622 Cannabis sativa HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
CARHR253430 Cardamine hirsuta HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
Haze_12764 Corylus avellana HOM05D001567 ORTHO05D001409 2.9e-06 55.8 51 45.1
Migut.M01364 Erythranthe guttata HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
Eucgr.E03980 Eucalyptus grandis HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
FvH4_3g01290 Fragaria vesca HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
FAN21G3527 Fragaria x ananassa HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
FAN25G3753 Fragaria x ananassa HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
Glyma.07G264100 Glycine max HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 53.7
Gohir.A06G152050 Gossypium hirsutum HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
Gohir.D06G158300 Gossypium hirsutum HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
Gorai.010G184800 Gossypium raimondii HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
Lj6g0015850 Lotus japonicus HOM05D001567 ORTHO05D001409 2.9e-06 55.8 50 44.0
Lalb_Chr18g0056821 Lupinus albus HOM05D001567 ORTHO05D001409 2.9e-06 55.8 46 47.8
MD05G1353900 Malus domestica HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
PGR042G3932 Punica granatum HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
QL08p030623 Quercus lobata HOM05D001567 ORTHO05D001409 2.9e-06 55.8 39 53.8
RcHm_v2.0_Chr5g0001841 Rosa chinensis HOM05D001567 ORTHO05D001409 2.9e-06 55.8 41 51.2
CSS0015197 Camellia sinensis var. sinensis HOM05D001567 ORTHO05D001409 3.8e-06 55.5 41 48.8
CSS0047477 Camellia sinensis var. sinensis HOM05D001567 ORTHO05D001409 3.8e-06 55.5 41 48.8
Cfa014316 Carpinus fangiana HOM05D001567 ORTHO05D001409 3.8e-06 55.5 51 45.1
CiPaw.03G154900 Carya illinoinensis HOM05D001567 ORTHO05D001409 3.8e-06 55.5 41 51.2
COL.COLO4_21886 Corchorus olitorius HOM05D001567 ORTHO05D001409 3.8e-06 55.5 41 51.2
Eucgr.K00751 Eucalyptus grandis HOM05D001567 ORTHO05D001409 3.8e-06 55.5 41 53.7
Gohir.A11G152700 Gossypium hirsutum HOM05D001567 ORTHO05D001409 3.8e-06 55.5 41 51.2
Gohir.D11G159600 Gossypium hirsutum HOM05D001567 ORTHO05D001409 3.8e-06 55.5 41 51.2
Gorai.007G170200 Gossypium raimondii HOM05D001567 ORTHO05D001409 3.8e-06 55.5 41 51.2
Nitab4.5_0000019g0340 Nicotiana tabacum HOM05D001567 ORTHO05D001409 3.8e-06 55.5 48 45.8
Nitab4.5_0009515g0010 Nicotiana tabacum HOM05D001567 ORTHO05D001409 3.8e-06 55.5 41 51.2
Potri.002G224200 Populus trichocarpa HOM05D001567 ORTHO05D001409 3.8e-06 55.5 41 51.2
Rhsim04G0050200 Rhododendron simsii HOM05D001567 ORTHO05D001409 3.8e-06 55.5 41 48.8
Sed0020262 Sechium edule HOM05D001567 ORTHO05D001409 3.8e-06 55.5 41 51.2
Sc05g0009480 Simmondsia chinensis HOM05D001567 ORTHO05D001409 3.8e-06 55.5 38 57.9
PGSC0003DMG400016713 Solanum tuberosum HOM05D001567 ORTHO05D001409 3.8e-06 55.5 59 45.8
CiPaw.03G241000 Carya illinoinensis HOM05D001567 ORTHO05D001409 4.9e-06 55.1 51 45.1
DCAR_002207 Daucus carota HOM05D001567 ORTHO05D001409 4.9e-06 55.1 41 51.2
MBI19_g03674_MAGBIO Magnolia biondii HOM05D001567 ORTHO05D001409 4.9e-06 55.1 38 55.3
Peaxi162Scf01096g00011 Petunia axillaris HOM05D001567 ORTHO05D001409 4.9e-06 55.1 51 45.1
Psat1g177600 Pisum sativum HOM05D001567 ORTHO05D001409 4.9e-06 55.1 41 51.2
Sopen02g025820 Solanum pennellii HOM05D001567 ORTHO05D001409 4.9e-06 55.1 59 45.8
Thecc.01G182500 Theobroma cacao HOM05D001567 ORTHO05D001409 4.9e-06 55.1 41 51.2
BolC1t01600H Brassica oleracea HOM05D001567 ORTHO05D001409 6.4e-06 54.7 41 51.2
Cc09_g01120 Coffea canephora HOM05D001567 ORTHO05D001409 6.4e-06 54.7 50 44.0
Lj1g0000938 Lotus japonicus HOM05D001567 ORTHO05D001409 6.4e-06 54.7 38 57.9
Sed0022233 Sechium edule HOM05D001567 ORTHO05D001409 6.4e-06 54.7 38 55.3
MSTRG.7186 Avicennia marina HOM05D001567 ORTHO05D001409 8.4e-06 54.3 51 41.2
CiPaw.03G148400 Carya illinoinensis HOM05D001567 ORTHO05D001409 8.4e-06 54.3 38 55.3
CiPaw.04G104800 Carya illinoinensis HOM05D001567 ORTHO05D001409 8.4e-06 54.3 38 55.3
DCAR_008591 Daucus carota HOM05D001567 ORTHO05D001409 8.4e-06 54.3 64 42.2
MBI11_g07425_MAGBIO Magnolia biondii HOM05D001567 ORTHO05D001409 8.4e-06 54.3 46 45.7
Manes.13G065850 Manihot esculenta HOM05D001567 ORTHO05D001409 8.4e-06 54.3 41 48.8
Oeu051876.1 Olea europaea HOM05D001567 ORTHO05D001409 8.4e-06 54.3 46 45.7
Os09g0505000 Oryza sativa ssp. japonica HOM05D001567 ORTHO05D001409 8.4e-06 54.3 38 55.3


User provided reference genes

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