Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 1.5e-122 443.0 233 100.0
Mapoly0028s0128 Marchantia polymorpha HOM05D005427 ORTHO05D006461 4.8e-17 92.4 228 30.3
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 2.4e-16 90.1 232 29.7
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 5.3e-16 89.0 238 29.4
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 1.2e-15 87.8 229 32.3
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 3.8e-14 82.8 232 31.0
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 4.2e-13 79.3 229 29.3
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 1.6e-12 77.4 234 28.2
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 1.6e-12 77.4 229 28.4
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 2.1e-12 77.0 228 28.5
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 2.1e-12 77.0 232 27.6
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 6.1e-12 75.5 228 28.1
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 1.8e-11 73.9 228 28.9
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 1.8e-11 73.9 230 30.4
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 1.8e-11 73.9 230 30.0
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 5.2e-11 72.4 229 27.5
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 6.7e-11 72.0 229 27.9
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 6.7e-11 72.0 228 27.6
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 6.7e-11 72.0 203 29.6
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 1.2e-10 71.2 229 27.5
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 1.5e-10 70.9 229 26.6
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 1.5e-10 70.9 229 26.6
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 1.5e-10 70.9 228 27.6
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.5e-10 70.9 226 24.3
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 2.6e-10 70.1 234 26.9
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 2.6e-10 70.1 230 25.7
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 3.3e-10 69.7 231 27.7
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 4.4e-10 69.3 230 26.5
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 4.4e-10 69.3 176 30.7
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 4.4e-10 69.3 232 27.2
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 5.7e-10 68.9 233 25.8
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 5.7e-10 68.9 230 29.1
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 5.7e-10 68.9 233 27.5
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 5.7e-10 68.9 233 27.0
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 7.5e-10 68.6 229 25.8
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 7.5e-10 68.6 234 25.6
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 9.7e-10 68.2 207 31.9
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 1.3e-09 67.8 231 26.8
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.7e-09 67.4 229 27.1
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 2.8e-09 66.6 63 47.6
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 2.8e-09 66.6 228 27.2
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 2.8e-09 66.6 229 26.6
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 3.7e-09 66.2 205 25.9
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 3.7e-09 66.2 228 27.6
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 4.8e-09 65.9 142 33.8
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 6.3e-09 65.5 232 25.4
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 6.3e-09 65.5 232 26.7
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 6.3e-09 65.5 229 26.6
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 8.2e-09 65.1 225 27.1
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 8.2e-09 65.1 233 27.5
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.1e-08 64.7 239 26.4
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 1.4e-08 64.3 180 27.2
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 1.8e-08 63.9 179 29.6
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 1.8e-08 63.9 78 43.6
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 1.8e-08 63.9 104 35.6
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 1.8e-08 63.9 110 37.3
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 2.4e-08 63.5 228 25.4
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 2.4e-08 63.5 228 25.4
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 2.4e-08 63.5 220 25.5
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 3.1e-08 63.2 205 27.3
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 3.1e-08 63.2 222 28.8
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 3.1e-08 63.2 236 25.4
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 3.1e-08 63.2 235 24.3
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 5.3e-08 62.4 221 28.5
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 5.3e-08 62.4 59 50.8
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 5.3e-08 62.4 220 25.0
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 5.3e-08 62.4 208 26.0
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 7.0e-08 62.0 176 26.7
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 9.1e-08 61.6 234 26.1
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 9.1e-08 61.6 62 43.5
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 1.2e-07 61.2 229 27.5
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 1.2e-07 61.2 228 29.8
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 1.6e-07 60.8 204 27.0
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.6e-07 60.8 156 30.8
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 1.6e-07 60.8 202 27.7
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.6e-07 60.8 223 24.2
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 2.0e-07 60.5 229 24.0
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 2.0e-07 60.5 202 22.8
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.7e-07 60.1 204 27.9
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 2.7e-07 60.1 203 26.1
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 2.7e-07 60.1 234 27.8
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 4.5e-07 59.3 83 38.6
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 4.5e-07 59.3 230 25.2
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 5.9e-07 58.9 176 29.0
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 5.9e-07 58.9 229 25.8
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 5.9e-07 58.9 176 30.7
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 7.7e-07 58.5 232 23.3
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 7.7e-07 58.5 228 25.0
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 7.7e-07 58.5 199 26.1
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 7.7e-07 58.5 234 25.6
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 1.0e-06 58.2 56 46.4
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 1.0e-06 58.2 56 46.4
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 1.0e-06 58.2 119 34.5
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 1.3e-06 57.8 100 33.0
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 1.7e-06 57.4 233 24.5
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 1.7e-06 57.4 233 24.5
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 1.7e-06 57.4 233 24.5
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.7e-06 57.4 62 41.9
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 2.2e-06 57.0 95 32.6
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 2.2e-06 57.0 159 29.6
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 2.9e-06 56.6 123 33.3
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 3.8e-06 56.2 229 25.3
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 3.8e-06 56.2 229 25.3
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 3.8e-06 56.2 106 34.0
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 5.0e-06 55.8 232 24.1
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 5.0e-06 55.8 232 24.1
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 5.0e-06 55.8 218 26.6
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 6.5e-06 55.5 237 25.7
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 6.5e-06 55.5 56 46.4


User provided reference genes

Program Settings