Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 4.7e-171 604.4 293 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 1.8e-122 443.0 284 74.3
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.5e-116 423.3 264 75.8
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.2e-113 413.7 271 74.5
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 8.8e-109 397.5 246 74.0
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 2.0e-105 386.3 241 71.8
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.3e-104 383.6 242 70.7
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 2.9e-104 382.5 241 71.8
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.1e-103 380.6 244 70.5
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 4.2e-103 378.6 244 70.1
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 5.5e-103 378.3 249 69.5
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.2e-102 377.1 244 70.1
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 1.6e-102 376.7 239 70.3
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 1.6e-102 376.7 240 70.4
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 3.6e-102 375.6 227 73.1
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 8.0e-102 374.4 247 68.8
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 8.0e-102 374.4 248 68.5
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 1.0e-101 374.0 251 68.1
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 1.4e-101 373.6 257 65.4
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 2.3e-101 372.9 245 69.8
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 2.3e-101 372.9 258 65.9
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 4.0e-101 372.1 233 70.0
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 4.0e-101 372.1 257 65.0
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 5.2e-101 371.7 252 67.1
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 8.8e-101 370.9 248 69.0
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.2e-100 370.5 239 70.3
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.5e-100 370.2 238 70.2
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 2.0e-100 369.8 261 65.1
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.6e-100 369.4 237 70.0
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 2.6e-100 369.4 236 68.6
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 3.4e-100 369.0 234 68.4
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 4.4e-100 368.6 245 67.3
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 5.7e-100 368.2 236 69.5
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 5.7e-100 368.2 249 67.1
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 7.5e-100 367.9 235 69.8
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 7.5e-100 367.9 237 68.8
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 9.8e-100 367.5 238 67.2
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 9.8e-100 367.5 222 73.0
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 1.3e-99 367.1 238 67.2
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 1.3e-99 367.1 236 69.5
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 1.7e-99 366.7 237 69.6
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 1.7e-99 366.7 237 67.9
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 2.8e-99 365.9 227 71.8
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 3.7e-99 365.5 238 67.6
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 3.7e-99 365.5 238 67.6
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 3.7e-99 365.5 240 67.9
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 3.7e-99 365.5 237 67.5
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 6.3e-99 364.8 238 67.6
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 6.3e-99 364.8 250 66.0
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 8.3e-99 364.4 238 67.2
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 8.3e-99 364.4 235 69.8
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 1.4e-98 363.6 238 67.6
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.4e-98 363.6 239 69.0
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 1.4e-98 363.6 231 68.0
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 1.4e-98 363.6 227 71.4
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 1.4e-98 363.6 232 67.2
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 1.8e-98 363.2 238 66.8
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 2.4e-98 362.8 228 67.5
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 3.1e-98 362.5 231 68.4
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 3.1e-98 362.5 250 65.6
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 4.1e-98 362.1 234 69.7
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 4.1e-98 362.1 246 65.4
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 5.4e-98 361.7 248 66.9
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 5.4e-98 361.7 238 68.5
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 7.0e-98 361.3 234 69.2
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.2e-97 360.5 255 65.5
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 2.0e-97 359.8 238 66.8
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.0e-97 359.8 234 69.2
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 2.0e-97 359.8 228 70.2
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 2.0e-97 359.8 243 67.5
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 3.5e-97 359.0 252 64.7
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 3.5e-97 359.0 229 69.9
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 4.5e-97 358.6 245 66.5
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 5.9e-97 358.2 234 68.4
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 5.9e-97 358.2 242 66.1
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 7.7e-97 357.8 245 65.3
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 7.7e-97 357.8 245 65.3
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 1.0e-96 357.5 235 66.4
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.0e-96 357.5 234 68.4
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 1.3e-96 357.1 239 67.8
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.3e-96 357.1 245 66.5
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 1.3e-96 357.1 239 68.2
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.7e-96 356.7 245 66.5
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 2.3e-96 356.3 238 66.4
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 8.6e-96 354.4 238 66.4
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 8.6e-96 354.4 227 68.7
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 8.6e-96 354.4 245 64.1
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.1e-95 354.0 231 68.4
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 3.3e-95 352.4 227 68.3
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.3e-95 352.4 247 64.8
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 5.5e-95 351.7 230 65.2
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 7.2e-95 351.3 231 64.9
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 2.1e-94 349.7 262 61.1
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 6.1e-94 348.2 221 68.3
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 1.0e-93 347.4 252 63.5
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.4e-93 347.1 220 66.8
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.8e-93 346.7 245 66.5
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 3.0e-93 345.9 236 68.6
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 4.0e-93 345.5 248 65.3
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 5.2e-93 345.1 236 66.9
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 5.2e-93 345.1 220 65.5
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 8.9e-93 344.4 250 61.6
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 1.5e-92 343.6 220 70.9
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 2.0e-92 343.2 272 59.2
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.6e-92 342.8 214 68.7
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 7.5e-92 341.3 202 71.3
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 1.3e-91 340.5 240 65.0
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 3.1e-90 335.9 277 57.0
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 7.0e-90 334.7 202 71.3
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.0e-89 333.2 275 57.1
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.5e-89 332.4 265 60.8
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 3.9e-88 328.9 220 67.3
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 1.9e-87 326.6 241 63.9
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 3.6e-86 322.4 256 58.2
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 6.1e-86 321.6 245 61.2
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 4.0e-85 318.9 239 62.3
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.2e-84 317.4 172 78.5
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 9.8e-84 314.3 242 60.3
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 3.7e-83 312.4 181 72.4
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.0e-81 306.6 241 58.5
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.2e-78 297.4 252 56.0
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 4.4e-76 288.9 164 73.2
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 4.6e-73 278.9 163 69.3
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 4.3e-71 272.3 278 50.4
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 1.6e-70 270.4 231 56.3
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 8.9e-69 264.6 202 57.9
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 3.4e-68 262.7 168 69.6
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 3.4e-68 262.7 274 48.5
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.0e-64 251.1 324 43.2
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 2.9e-59 233.0 143 69.2
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.4e-58 229.9 130 74.6
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 5.1e-56 222.2 199 55.8
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 1.3e-54 217.6 153 64.1
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 4.8e-54 215.7 131 71.8
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 9.9e-52 208.0 214 50.5
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.1e-39 167.9 120 67.5
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 5.6e-39 165.6 111 64.0
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.4e-29 133.7 66 83.3
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 9.3e-26 121.7 65 84.6
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.3e-23 113.2 67 70.1
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.7e-22 109.8 82 59.8
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 3.7e-22 109.8 70 67.1
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 3.8e-19 99.8 81 59.3
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 1.4e-16 91.3 66 66.7
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 5.1e-16 89.4 52 73.1
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.7e-14 84.3 67 61.2
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 4.1e-13 79.7 82 51.2
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.0e-12 77.4 80 56.2
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 1.3e-11 74.7 91 45.1
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 2.2e-11 73.9 48 62.5
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 5.5e-10 69.3 52 55.8
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 3.0e-08 63.5 78 41.0
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 9.7e-07 58.5 55 56.4
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 1.7e-06 57.8 73 46.6
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 8.2e-06 55.5 55 54.5


User provided reference genes

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