Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 0.0e+00 1913.3 1024 100.0
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 0.0e+00 1222.6 1028 63.9
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 0.0e+00 1086.6 1029 57.7
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 1.7e-303 1046.2 979 56.5
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 2.8e-303 1045.4 996 55.9
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 3.7e-303 1045.0 1001 56.5
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.8e-302 1042.7 950 55.8
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 7.7e-301 1037.3 981 55.9
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 1.3e-300 1036.6 980 55.5
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.2e-300 1035.8 1015 54.5
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 2.9e-300 1035.4 952 56.0
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 7.2e-299 1030.8 963 56.0
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 3.6e-298 1028.5 1006 54.2
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 3.9e-297 1025.0 956 55.8
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 3.9e-297 1025.0 985 54.7
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 8.8e-297 1023.8 1020 54.3
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 1.1e-296 1023.5 984 54.3
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 1.3e-295 1020.0 1011 54.6
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 1.7e-295 1019.6 1011 54.7
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 3.7e-295 1018.5 1010 54.5
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 4.8e-295 1018.1 986 55.6
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 1.4e-294 1016.5 979 56.0
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 1.4e-294 1016.5 994 55.4
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 2.4e-294 1015.8 985 55.1
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 3.1e-294 1015.4 965 54.4
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 2.0e-293 1012.7 1017 54.0
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 1.0e-292 1010.4 955 55.7
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 1.7e-292 1009.6 979 55.0
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 1.4e-291 1006.5 951 54.6
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 4.2e-291 1005.0 980 54.3
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 5.5e-291 1004.6 956 54.9
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 1.2e-290 1003.4 987 54.2
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 6.1e-290 1001.1 982 53.8
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 8.0e-290 1000.7 973 54.3
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 1.0e-289 1000.3 936 55.4
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 2.3e-289 999.2 985 53.9
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 8.8e-289 997.3 990 53.9
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 1.1e-288 996.9 983 53.0
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.5e-288 996.5 958 54.1
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 4.4e-288 995.0 997 53.5
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 1.7e-287 993.0 959 54.6
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 2.2e-287 992.6 1010 53.6
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 2.2e-287 992.6 983 53.3
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 6.3e-287 991.1 1015 53.4
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 4.1e-286 988.4 1010 52.7
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 7.0e-286 987.6 977 53.6
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 1.2e-285 986.9 967 54.3
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 1.0e-284 983.8 991 52.9
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.3e-284 983.4 1012 53.2
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 1.7e-284 983.0 976 52.2
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 1.7e-284 983.0 935 54.8
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 2.9e-284 982.2 983 52.5
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 3.8e-284 981.9 988 51.8
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 5.0e-284 981.5 939 55.1
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 5.0e-284 981.5 964 52.9
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 8.5e-284 980.7 990 52.7
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 1.5e-283 979.9 979 52.1
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.5e-283 979.2 995 51.4
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 3.2e-283 978.8 998 51.3
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 3.2e-283 978.8 956 53.5
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 5.5e-283 978.0 937 54.4
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 1.2e-282 976.9 934 53.5
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 1.6e-282 976.5 998 51.1
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 1.6e-282 976.5 960 54.4
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 2.7e-282 975.7 952 53.7
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 4.7e-282 974.9 983 53.2
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 4.7e-282 974.9 972 53.2
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.4e-281 973.4 975 53.7
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 3.0e-281 972.2 969 52.7
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 8.8e-281 970.7 985 53.5
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 1.2e-280 970.3 936 53.1
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 2.6e-280 969.1 981 52.0
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 5.7e-280 968.0 980 51.7
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 5.7e-280 968.0 940 53.8
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 7.5e-280 967.6 980 51.7
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 9.7e-280 967.2 977 51.7
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 2.2e-279 966.1 996 51.4
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 2.2e-279 966.1 984 53.0
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 4.8e-279 964.9 935 53.8
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 2.4e-278 962.6 1003 51.6
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 9.1e-278 960.7 996 51.1
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 1.2e-277 960.3 1036 51.4
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 2.0e-277 959.5 996 51.1
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 2.0e-277 959.5 936 53.0
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 1.0e-276 957.2 993 52.0
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 5.0e-276 954.9 987 51.7
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 1.5e-275 953.4 1005 50.4
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 1.9e-275 953.0 952 53.8
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 1.6e-274 949.9 959 51.5
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 2.7e-274 949.1 982 52.2
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 8.0e-274 947.6 949 52.2
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 1.2e-272 943.7 983 50.6
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 4.4e-272 941.8 1007 50.7
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 7.5e-272 941.0 989 51.0
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 2.7e-269 932.6 976 50.6
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 1.9e-267 926.4 943 52.4
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 1.9e-267 926.4 977 50.8
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 1.3e-263 913.7 1025 48.2
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 2.8e-263 912.5 975 50.5
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 3.7e-263 912.1 994 49.5
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 8.3e-263 911.0 934 51.6
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 1.4e-262 910.2 1002 50.2
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 5.0e-260 901.7 976 51.0
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 6.1e-258 894.8 703 67.7
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 4.4e-256 888.6 828 54.6
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 1.3e-255 887.1 961 49.6
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 9.2e-254 880.9 797 57.2
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 3.3e-251 872.5 855 53.2
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 1.6e-250 870.2 1032 46.0
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 1.6e-245 853.6 790 56.6
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 3.7e-239 832.4 787 55.4
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 3.7e-239 832.4 958 48.2
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 1.1e-238 830.9 982 45.7
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 2.2e-223 780.0 704 57.2
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 1.3e-215 754.2 749 52.5
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 7.9e-189 665.2 685 52.0
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 1.1e-187 661.4 651 53.1
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.3e-162 578.2 597 50.9
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.4e-161 573.9 563 52.6
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 8.5e-159 565.5 563 52.2
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 1.2e-157 561.6 555 49.7
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 2.1e-157 560.8 1064 34.3
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 2.3e-151 540.8 971 37.7
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 9.8e-147 525.4 1042 33.2
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 2.2e-138 497.7 620 45.8
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 3.5e-136 490.3 562 46.6
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 3.9e-135 486.9 464 56.9
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 6.4e-130 469.5 529 48.0
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 1.5e-123 448.4 994 32.2
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 1.3e-119 435.3 614 41.7
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 3.8e-106 390.6 580 42.1
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 1.8e-95 355.1 346 53.5
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 4.8e-85 320.5 320 50.0
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 2.5e-81 308.1 369 43.6
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 1.2e-75 289.3 277 54.9
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.3e-74 285.8 255 56.5
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 2.2e-74 285.0 385 44.7
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 3.2e-73 281.2 296 52.4
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 7.2e-73 280.0 425 38.1
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 1.6e-72 278.9 277 53.1
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 1.4e-71 275.8 263 52.9
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 3.9e-71 274.2 481 37.0
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 4.5e-67 260.8 221 56.6
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 7.7e-67 260.0 555 33.0
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 2.9e-66 258.1 279 52.7
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 1.9e-57 228.8 244 49.2
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 1.8e-55 222.2 534 33.3
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 8.8e-55 219.9 302 45.0
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 2.2e-53 215.3 246 48.8
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.0e-47 196.4 245 49.4
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 2.0e-46 192.2 192 54.2
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 1.3e-45 189.5 219 43.8
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 5.4e-44 184.1 267 39.0
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 2.2e-42 178.7 311 39.5
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 8.5e-42 176.8 227 45.8
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 8.0e-40 170.2 574 25.4
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 6.8e-39 167.2 408 32.8
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 6.8e-39 167.2 423 31.9
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 1.5e-38 166.0 134 60.4
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.2e-37 162.2 166 54.8
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 5.9e-35 154.1 192 43.2
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 1.8e-31 142.5 157 51.0
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 2.6e-30 138.7 165 49.7
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 7.5e-30 137.1 122 55.7
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 8.0e-24 117.1 160 44.4
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 6.8e-23 114.0 172 44.2
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 8.9e-23 113.6 92 59.8
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 1.2e-22 113.2 133 45.1
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 2.0e-22 112.5 98 56.1
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 5.8e-22 110.9 75 68.0
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 5.8e-22 110.9 75 68.0
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 1.2e-19 103.2 235 30.6
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 6.0e-19 100.9 126 42.9
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 3.9e-18 98.2 180 35.0
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 5.6e-17 94.4 66 63.6
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 4.4e-14 84.7 168 39.3
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 3.7e-13 81.6 121 38.0
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 7.1e-12 77.4 76 47.4
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 1.2e-11 76.6 136 36.0
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 4.3e-09 68.2 155 38.1


User provided reference genes

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