Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 0.0e+00 1456.4 734 100.0
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 8.6e-137 491.9 709 43.3
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 8.4e-124 448.7 701 41.5
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 2.0e-117 427.6 684 40.4
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 4.4e-117 426.4 712 41.0
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 1.7e-116 424.5 694 40.9
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 5.4e-115 419.5 708 40.4
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 7.1e-115 419.1 703 39.5
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 1.2e-114 418.3 692 40.0
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 6.0e-114 416.0 708 40.1
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.0e-113 415.2 721 40.1
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 1.0e-113 415.2 703 40.4
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 3.9e-113 413.3 704 39.9
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 5.1e-113 412.9 698 41.3
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 8.7e-113 412.1 700 38.4
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 8.7e-113 412.1 710 39.7
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 1.5e-112 411.4 709 41.0
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 2.5e-112 410.6 710 40.7
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 7.3e-112 409.1 704 40.9
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 1.3e-111 408.3 708 41.0
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 1.3e-111 408.3 687 41.2
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 1.6e-111 407.9 704 39.9
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 4.8e-111 406.4 708 39.7
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 4.8e-111 406.4 709 39.2
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 6.2e-111 406.0 670 40.3
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 6.2e-111 406.0 692 40.6
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 8.1e-111 405.6 676 40.7
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 8.1e-111 405.6 716 40.8
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 1.1e-110 405.2 705 39.1
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 1.8e-110 404.4 716 39.1
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 1.8e-110 404.4 693 40.4
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 2.4e-110 404.1 678 39.4
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 9.0e-110 402.1 709 39.8
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 1.5e-109 401.4 718 38.4
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 1.5e-109 401.4 716 39.8
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.5e-109 401.4 722 39.1
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 2.0e-109 401.0 690 40.1
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 2.0e-109 401.0 681 40.5
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 2.0e-109 401.0 687 40.9
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 4.4e-109 399.8 705 39.9
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 4.4e-109 399.8 731 38.3
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 5.8e-109 399.4 703 39.3
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 5.8e-109 399.4 722 39.2
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 5.8e-109 399.4 691 40.1
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 9.9e-109 398.7 682 40.9
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 9.9e-109 398.7 680 40.9
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.3e-108 398.3 701 39.2
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.3e-108 398.3 704 40.1
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.7e-108 397.9 682 39.7
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 1.7e-108 397.9 708 38.7
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 2.2e-108 397.5 707 39.5
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 2.2e-108 397.5 675 40.1
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 2.9e-108 397.1 710 38.6
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 2.9e-108 397.1 704 39.3
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 3.8e-108 396.7 685 39.7
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 3.8e-108 396.7 698 39.5
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 3.8e-108 396.7 702 39.0
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 4.9e-108 396.4 699 39.8
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 1.9e-107 394.4 722 37.4
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 1.9e-107 394.4 686 39.8
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 3.2e-107 393.7 675 39.9
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 4.2e-107 393.3 713 39.7
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 4.2e-107 393.3 710 40.0
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 7.1e-107 392.5 673 39.1
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 9.3e-107 392.1 697 40.2
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 9.3e-107 392.1 682 39.9
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 1.2e-106 391.7 708 40.4
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 1.6e-106 391.3 716 37.2
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.6e-106 391.3 682 39.4
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 2.1e-106 391.0 722 37.8
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 3.5e-106 390.2 698 39.7
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 3.5e-106 390.2 711 39.1
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 6.0e-106 389.4 701 38.2
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 6.0e-106 389.4 705 37.9
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 7.9e-106 389.0 739 37.9
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 1.0e-105 388.7 732 37.4
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 1.3e-105 388.3 686 39.1
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 2.3e-105 387.5 694 39.0
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 8.7e-105 385.6 720 36.8
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 1.1e-104 385.2 706 38.8
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 1.5e-104 384.8 708 38.4
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 1.9e-104 384.4 695 39.0
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 1.9e-104 384.4 677 39.4
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 3.3e-104 383.6 704 39.1
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 4.3e-104 383.3 700 37.7
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 5.6e-104 382.9 686 39.9
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 7.4e-104 382.5 692 39.2
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 9.6e-104 382.1 685 39.6
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 1.3e-103 381.7 713 39.0
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 1.3e-103 381.7 693 38.5
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 1.6e-103 381.3 680 38.4
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 1.4e-102 378.3 705 39.0
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 1.4e-102 378.3 713 37.2
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 1.8e-102 377.9 679 40.2
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 4.0e-102 376.7 701 38.2
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 4.0e-102 376.7 698 37.4
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 6.9e-102 375.9 723 37.6
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 9.0e-102 375.6 679 39.9
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 1.2e-101 375.2 707 38.5
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 2.6e-101 374.0 674 39.2
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 4.5e-101 373.2 619 41.0
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 3.8e-100 370.2 720 38.2
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 3.8e-100 370.2 721 36.3
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 4.9e-100 369.8 688 38.5
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 3.2e-99 367.1 713 35.9
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 5.5e-99 366.3 693 37.8
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 3.5e-98 363.6 675 37.2
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 3.5e-98 363.6 684 39.0
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 4.6e-98 363.2 808 35.5
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 6.0e-98 362.8 680 38.5
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 7.9e-98 362.5 692 38.2
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 3.0e-97 360.5 692 38.6
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 1.1e-94 352.1 691 37.5
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 3.1e-94 350.5 675 37.2
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 1.2e-93 348.6 641 37.3
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 2.0e-93 347.8 691 37.5
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 5.8e-93 346.3 600 41.3
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 6.5e-92 342.8 688 35.8
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 3.5e-90 337.0 639 39.0
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 6.0e-90 336.3 776 34.1
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.3e-89 335.1 684 38.6
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 7.4e-88 329.3 671 36.2
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 9.6e-88 328.9 622 38.1
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 6.3e-87 326.2 641 37.3
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 6.3e-87 326.2 679 36.5
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 7.6e-85 319.3 603 38.6
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 1.7e-84 318.2 744 35.1
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.9e-84 317.4 706 35.7
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 6.5e-84 316.2 682 35.9
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 6.1e-82 309.7 715 34.5
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 1.0e-81 308.9 648 36.1
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 8.7e-81 305.8 539 39.9
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 9.7e-80 302.4 702 35.9
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 1.6e-79 301.6 714 34.5
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 1.2e-77 295.4 537 37.6
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 6.5e-76 289.7 551 38.7
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 5.7e-72 276.6 571 38.0
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 7.4e-72 276.2 506 39.1
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 2.8e-71 274.2 648 33.8
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 1.8e-70 271.6 531 39.2
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 1.4e-67 261.9 536 35.8
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 1.6e-66 258.5 664 32.8
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 4.7e-66 256.9 480 37.5
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 4.7e-66 256.9 318 47.2
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 7.9e-66 256.1 611 33.6
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 7.4e-64 249.6 311 48.9
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 2.3e-57 228.0 680 30.1
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 4.0e-57 227.3 298 47.0
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 9.7e-56 222.6 244 49.6
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 2.2e-55 221.5 240 52.1
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 1.9e-51 208.4 533 32.3
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 2.0e-48 198.4 476 34.7
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 4.2e-43 180.6 343 37.3
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 1.5e-40 172.2 279 40.1
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 9.8e-40 169.5 784 25.8
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 1.3e-36 159.1 422 32.5
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 4.3e-35 154.1 234 43.6
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.9e-31 141.4 279 35.8
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 4.6e-29 134.0 236 39.4
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 3.9e-28 131.0 421 30.4
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 2.6e-24 118.2 134 44.8
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 2.7e-21 108.2 209 34.4
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 4.6e-21 107.5 103 55.3
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 1.8e-17 95.5 112 48.2
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 4.0e-17 94.4 248 28.2
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 6.8e-17 93.6 119 45.4
arahy.Tifrunner.gnm1.ann1.NAA2I0 Arachis hypogaea HOM05D003691 ORTHO05D004288 8.3e-15 86.7 61 68.9
MD03G1195600 Malus domestica HOM05D003691 ORTHO05D004288 1.6e-13 82.4 169 37.3
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 3.5e-13 81.3 159 33.3
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 2.3e-12 78.6 83 45.8
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 1.1e-11 76.3 52 65.4
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 3.3e-11 74.7 82 46.3
Glyma.13G310451 Glycine max HOM05D003691 ORTHO05D004288 3.4e-08 64.7 50 58.0
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 1.3e-07 62.8 48 58.3
Cre13.g589300 Chlamydomonas reinhardtii HOM05D003691 ORTHO05D004288 1.4e-06 59.3 206 24.3
SHI10370 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-06 59.3 42 64.3


User provided reference genes

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